miRNA display CGI


Results 1 - 20 of 53 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33055 5' -61.6 NC_007497.1 + 21401 1.11 0.000129
Target:  5'- gACAGCGAGCUGAGCCGUCCGGCGCGCg -3'
miRNA:   3'- -UGUCGCUCGACUCGGCAGGCCGCGCG- -5'
33055 5' -61.6 NC_007497.1 + 2982 0.77 0.05764
Target:  5'- -gAGCGAGCaggagGAgGCCGaucUCCGGCGCGUg -3'
miRNA:   3'- ugUCGCUCGa----CU-CGGC---AGGCCGCGCG- -5'
33055 5' -61.6 NC_007497.1 + 190 0.77 0.059295
Target:  5'- -gGGuCGAGCUgGAGCCGUCugucgccgCGGUGCGCg -3'
miRNA:   3'- ugUC-GCUCGA-CUCGGCAG--------GCCGCGCG- -5'
33055 5' -61.6 NC_007497.1 + 13501 0.76 0.064542
Target:  5'- gACcGCGAuauucgGCUGuucGCCGUCUGGUGCGCg -3'
miRNA:   3'- -UGuCGCU------CGACu--CGGCAGGCCGCGCG- -5'
33055 5' -61.6 NC_007497.1 + 15614 0.76 0.070235
Target:  5'- aACAGCGAGCcGAGCguUUCGaGCGCGCu -3'
miRNA:   3'- -UGUCGCUCGaCUCGgcAGGC-CGCGCG- -5'
33055 5' -61.6 NC_007497.1 + 35517 0.74 0.090352
Target:  5'- gACGGUGAGCUu-GCCGUCCucGGCgaGCGCc -3'
miRNA:   3'- -UGUCGCUCGAcuCGGCAGG--CCG--CGCG- -5'
33055 5' -61.6 NC_007497.1 + 3215 0.73 0.106688
Target:  5'- -aAGCGcGCUGGccggcGCCGUCCGaGCGCGa -3'
miRNA:   3'- ugUCGCuCGACU-----CGGCAGGC-CGCGCg -5'
33055 5' -61.6 NC_007497.1 + 42508 0.73 0.112725
Target:  5'- uGCGGaCGAGCUuGGGCC-UCCGGCugcuuuucGCGCc -3'
miRNA:   3'- -UGUC-GCUCGA-CUCGGcAGGCCG--------CGCG- -5'
33055 5' -61.6 NC_007497.1 + 34892 0.72 0.132802
Target:  5'- -gGGCGAGCUcGAG-CGUCCgaGGCGuCGCu -3'
miRNA:   3'- ugUCGCUCGA-CUCgGCAGG--CCGC-GCG- -5'
33055 5' -61.6 NC_007497.1 + 27478 0.72 0.136453
Target:  5'- gGCAGCGAGCguaaGAcGCgGUacaCGGuCGCGCu -3'
miRNA:   3'- -UGUCGCUCGa---CU-CGgCAg--GCC-GCGCG- -5'
33055 5' -61.6 NC_007497.1 + 32927 0.71 0.144034
Target:  5'- cCGGCGAGCcaacGuGCCGUCUuuucGCGCGCc -3'
miRNA:   3'- uGUCGCUCGa---CuCGGCAGGc---CGCGCG- -5'
33055 5' -61.6 NC_007497.1 + 28006 0.71 0.156128
Target:  5'- uCAGCGAGCUGuGCgCaUUCGGCGUaauGCg -3'
miRNA:   3'- uGUCGCUCGACuCG-GcAGGCCGCG---CG- -5'
33055 5' -61.6 NC_007497.1 + 5367 0.71 0.16036
Target:  5'- gACGaCGAcCUGAcGCguaCGUCCGGCGCGCu -3'
miRNA:   3'- -UGUcGCUcGACU-CG---GCAGGCCGCGCG- -5'
33055 5' -61.6 NC_007497.1 + 7166 0.71 0.164256
Target:  5'- -uGGCGGGCUgGAGCCGagcaacgcgaagaUCaGGUGCGCc -3'
miRNA:   3'- ugUCGCUCGA-CUCGGC-------------AGgCCGCGCG- -5'
33055 5' -61.6 NC_007497.1 + 34608 0.71 0.164695
Target:  5'- cACGGUGGGCUcaGGGCUGUugucgguggUCGGCGgGCu -3'
miRNA:   3'- -UGUCGCUCGA--CUCGGCA---------GGCCGCgCG- -5'
33055 5' -61.6 NC_007497.1 + 23779 0.7 0.172305
Target:  5'- gGCcGCGAGCUGGuaCGUguggcccuucaggcUCGGCGUGCa -3'
miRNA:   3'- -UGuCGCUCGACUcgGCA--------------GGCCGCGCG- -5'
33055 5' -61.6 NC_007497.1 + 27238 0.7 0.183101
Target:  5'- gACGGCGuGCUG-GUCgGUCCGGgGCa- -3'
miRNA:   3'- -UGUCGCuCGACuCGG-CAGGCCgCGcg -5'
33055 5' -61.6 NC_007497.1 + 27092 0.7 0.187979
Target:  5'- cACGGCGAuCcu-GCCGUCgGGCGuCGCa -3'
miRNA:   3'- -UGUCGCUcGacuCGGCAGgCCGC-GCG- -5'
33055 5' -61.6 NC_007497.1 + 16853 0.7 0.192971
Target:  5'- cGCugauGCGGGCUGcucGuCCG-CCGGCGCGg -3'
miRNA:   3'- -UGu---CGCUCGACu--C-GGCaGGCCGCGCg -5'
33055 5' -61.6 NC_007497.1 + 23880 0.7 0.192971
Target:  5'- cCGGCGuGaaGcGCUGgCCGGCGCGCa -3'
miRNA:   3'- uGUCGCuCgaCuCGGCaGGCCGCGCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.