miRNA display CGI


Results 1 - 15 of 15 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33056 5' -57.5 NC_007497.1 + 39249 0.66 0.553818
Target:  5'- gAUGCGCGCGaUGaaGGUCGc-CGCCAg -3'
miRNA:   3'- gUACGCGCGCaGCa-UCAGCucGCGGU- -5'
33056 5' -57.5 NC_007497.1 + 3532 0.66 0.553818
Target:  5'- --cGCGCGCGUCGUcuugccaauGccccuucaccUCGuGCGCCu -3'
miRNA:   3'- guaCGCGCGCAGCAu--------C----------AGCuCGCGGu -5'
33056 5' -57.5 NC_007497.1 + 32237 0.66 0.531326
Target:  5'- --gGcCGaCGCGUCGcagaugaUGG-CGAGCGCCGa -3'
miRNA:   3'- guaC-GC-GCGCAGC-------AUCaGCUCGCGGU- -5'
33056 5' -57.5 NC_007497.1 + 16227 0.66 0.521787
Target:  5'- -cUGUGUGCuUCGUucgCGGGCGCCc -3'
miRNA:   3'- guACGCGCGcAGCAucaGCUCGCGGu -5'
33056 5' -57.5 NC_007497.1 + 41069 0.66 0.511267
Target:  5'- --cGCGCGCGcCGauGUUGcgaAGCGCCGc -3'
miRNA:   3'- guaCGCGCGCaGCauCAGC---UCGCGGU- -5'
33056 5' -57.5 NC_007497.1 + 30770 0.67 0.480264
Target:  5'- --cGUGuCGCGgCGUAGUCGcGGCGUUAa -3'
miRNA:   3'- guaCGC-GCGCaGCAUCAGC-UCGCGGU- -5'
33056 5' -57.5 NC_007497.1 + 23571 0.67 0.480264
Target:  5'- -cUGgGCGCGgCGg---CGGGCGCCGg -3'
miRNA:   3'- guACgCGCGCaGCaucaGCUCGCGGU- -5'
33056 5' -57.5 NC_007497.1 + 42788 0.67 0.470133
Target:  5'- aAUGCGCGaGUCGUuccGGUCGGGaaCGCa- -3'
miRNA:   3'- gUACGCGCgCAGCA---UCAGCUC--GCGgu -5'
33056 5' -57.5 NC_007497.1 + 42616 0.68 0.430754
Target:  5'- -cUGCGCGgG-CGga-UUGAGCGCCAu -3'
miRNA:   3'- guACGCGCgCaGCaucAGCUCGCGGU- -5'
33056 5' -57.5 NC_007497.1 + 27079 0.68 0.430754
Target:  5'- cCGU-CGgGCGUCGcacAGUCGcGCGCCGu -3'
miRNA:   3'- -GUAcGCgCGCAGCa--UCAGCuCGCGGU- -5'
33056 5' -57.5 NC_007497.1 + 27908 0.68 0.402522
Target:  5'- --aGCGCGCGUCGaacGUcauacccaCGAGCGCa- -3'
miRNA:   3'- guaCGCGCGCAGCau-CA--------GCUCGCGgu -5'
33056 5' -57.5 NC_007497.1 + 17339 0.69 0.349717
Target:  5'- aCGUGCGCGCGagGcuuUCGAGCGUg- -3'
miRNA:   3'- -GUACGCGCGCagCaucAGCUCGCGgu -5'
33056 5' -57.5 NC_007497.1 + 23104 0.72 0.222016
Target:  5'- uCGUuaGCGCGUCGUAGUCGcGCucgcacugcugGCCGg -3'
miRNA:   3'- -GUAcgCGCGCAGCAUCAGCuCG-----------CGGU- -5'
33056 5' -57.5 NC_007497.1 + 6938 0.73 0.199656
Target:  5'- --aGUGCGCGUCucGGUuucCGGGCGCCAu -3'
miRNA:   3'- guaCGCGCGCAGcaUCA---GCUCGCGGU- -5'
33056 5' -57.5 NC_007497.1 + 21660 1.08 0.000558
Target:  5'- uCAUGCGCGCGUCGUAGUCGAGCGCCAa -3'
miRNA:   3'- -GUACGCGCGCAGCAUCAGCUCGCGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.