miRNA display CGI


Results 21 - 40 of 45 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33059 5' -51 NC_007497.1 + 17268 0.66 0.908028
Target:  5'- gGCGGCUGCGGgGCGgccGCGAUu-- -3'
miRNA:   3'- gCGCUGAUGCUgCGCgauUGCUAucc -5'
33059 5' -51 NC_007497.1 + 27280 0.66 0.908028
Target:  5'- uCGCGA-UACGAgGCGggAACGGUGu- -3'
miRNA:   3'- -GCGCUgAUGCUgCGCgaUUGCUAUcc -5'
33059 5' -51 NC_007497.1 + 26585 0.66 0.908028
Target:  5'- gCGCGugUGCG-CGCGCagAACGu---- -3'
miRNA:   3'- -GCGCugAUGCuGCGCGa-UUGCuaucc -5'
33059 5' -51 NC_007497.1 + 22095 0.66 0.908028
Target:  5'- aGCaGGCgcCGAaaaGCGCUcGAUGGUGGGc -3'
miRNA:   3'- gCG-CUGauGCUg--CGCGA-UUGCUAUCC- -5'
33059 5' -51 NC_007497.1 + 25426 0.66 0.912684
Target:  5'- gCGCGuCUAUGACggaaacggcaugcuGCGCguGCGuAUGGGg -3'
miRNA:   3'- -GCGCuGAUGCUG--------------CGCGauUGC-UAUCC- -5'
33059 5' -51 NC_007497.1 + 34732 0.67 0.845214
Target:  5'- uCGCGACgcaGGCGCGCgAGCGcgccgaacgAGGc -3'
miRNA:   3'- -GCGCUGaugCUGCGCGaUUGCua-------UCC- -5'
33059 5' -51 NC_007497.1 + 14301 0.68 0.839841
Target:  5'- gCGuCGGCUgucugaggccggagaGCGAUGCGagcaGAUGAUAGGg -3'
miRNA:   3'- -GC-GCUGA---------------UGCUGCGCga--UUGCUAUCC- -5'
33059 5' -51 NC_007497.1 + 14112 0.68 0.836214
Target:  5'- uCGUGA--GCGugGCGauguCGAUGGGg -3'
miRNA:   3'- -GCGCUgaUGCugCGCgauuGCUAUCC- -5'
33059 5' -51 NC_007497.1 + 33111 0.74 0.470441
Target:  5'- gCGCGAgaGCuGGcCGCGCUGuCGAUGGGc -3'
miRNA:   3'- -GCGCUgaUG-CU-GCGCGAUuGCUAUCC- -5'
33059 5' -51 NC_007497.1 + 15713 0.74 0.480854
Target:  5'- --aGACUGCuACGUGCguugGACGGUGGGa -3'
miRNA:   3'- gcgCUGAUGcUGCGCGa---UUGCUAUCC- -5'
33059 5' -51 NC_007497.1 + 40299 0.73 0.534465
Target:  5'- uGcCGACgucCGACGCGUUGGCGA-AGGu -3'
miRNA:   3'- gC-GCUGau-GCUGCGCGAUUGCUaUCC- -5'
33059 5' -51 NC_007497.1 + 31054 0.72 0.567635
Target:  5'- aCGCuACUGCuGAC-CGCUGGCGaAUGGGa -3'
miRNA:   3'- -GCGcUGAUG-CUGcGCGAUUGC-UAUCC- -5'
33059 5' -51 NC_007497.1 + 30996 0.7 0.680337
Target:  5'- aCGCGA--ACGGCGUGaccCUAACGAUGGc -3'
miRNA:   3'- -GCGCUgaUGCUGCGC---GAUUGCUAUCc -5'
33059 5' -51 NC_007497.1 + 3153 0.7 0.713709
Target:  5'- -uCGACgGCGACGCGCUGAuCGAc--- -3'
miRNA:   3'- gcGCUGaUGCUGCGCGAUU-GCUaucc -5'
33059 5' -51 NC_007497.1 + 16733 0.69 0.746316
Target:  5'- aCGCGA--GCGGCGCGCUcccGGCG-UAGc -3'
miRNA:   3'- -GCGCUgaUGCUGCGCGA---UUGCuAUCc -5'
33059 5' -51 NC_007497.1 + 34175 0.69 0.777822
Target:  5'- gCGCGACUcguCGACGUGUUcgucgcGGCGAcgcgcgGGGg -3'
miRNA:   3'- -GCGCUGAu--GCUGCGCGA------UUGCUa-----UCC- -5'
33059 5' -51 NC_007497.1 + 27248 0.69 0.788021
Target:  5'- gGuCGGCauggACGGCGUGCUGGuCGGUccGGGg -3'
miRNA:   3'- gC-GCUGa---UGCUGCGCGAUU-GCUA--UCC- -5'
33059 5' -51 NC_007497.1 + 4441 0.69 0.788021
Target:  5'- cCGCGGCUACaaGAUGCG-UAGCGAgacgccGGa -3'
miRNA:   3'- -GCGCUGAUG--CUGCGCgAUUGCUau----CC- -5'
33059 5' -51 NC_007497.1 + 5006 0.68 0.836214
Target:  5'- gGCGGCcACGugGCGC-AAC--UGGGu -3'
miRNA:   3'- gCGCUGaUGCugCGCGaUUGcuAUCC- -5'
33059 5' -51 NC_007497.1 + 15441 0.68 0.836214
Target:  5'- aCGCGAUacagACGAuuguuuguaauCGCGCaauacaGGCGAUAGGc -3'
miRNA:   3'- -GCGCUGa---UGCU-----------GCGCGa-----UUGCUAUCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.