miRNA display CGI


Results 1 - 20 of 45 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33059 5' -51 NC_007497.1 + 30717 0.76 0.363533
Target:  5'- cCGCGAC-ACGACGCGCUGucagcuggccccaAC-AUGGGa -3'
miRNA:   3'- -GCGCUGaUGCUGCGCGAU-------------UGcUAUCC- -5'
33059 5' -51 NC_007497.1 + 35824 0.66 0.914635
Target:  5'- aGCGGCUGCcGCGUuGCUugcGCGAUGc- -3'
miRNA:   3'- gCGCUGAUGcUGCG-CGAu--UGCUAUcc -5'
33059 5' -51 NC_007497.1 + 27271 0.66 0.914635
Target:  5'- uGCGcCUGCGACGUGCaccCGAa--- -3'
miRNA:   3'- gCGCuGAUGCUGCGCGauuGCUaucc -5'
33059 5' -51 NC_007497.1 + 39155 0.66 0.893955
Target:  5'- uCGCGACggccCGACGCuuacucGCUGGCGGc--- -3'
miRNA:   3'- -GCGCUGau--GCUGCG------CGAUUGCUaucc -5'
33059 5' -51 NC_007497.1 + 22869 0.66 0.886496
Target:  5'- gCGCGcGCUGCGACGU---AACGAgcGGc -3'
miRNA:   3'- -GCGC-UGAUGCUGCGcgaUUGCUauCC- -5'
33059 5' -51 NC_007497.1 + 3377 0.66 0.886496
Target:  5'- uGCGGCgcACuGCGCGCgGGCGAUAu- -3'
miRNA:   3'- gCGCUGa-UGcUGCGCGaUUGCUAUcc -5'
33059 5' -51 NC_007497.1 + 40507 0.67 0.878762
Target:  5'- aGCGcCcgGCGugGCGUUuccGGCGGUAGc -3'
miRNA:   3'- gCGCuGa-UGCugCGCGA---UUGCUAUCc -5'
33059 5' -51 NC_007497.1 + 449 0.69 0.756957
Target:  5'- uCGCGACacGCGACGCaGCgAGCGAUu-- -3'
miRNA:   3'- -GCGCUGa-UGCUGCG-CGaUUGCUAucc -5'
33059 5' -51 NC_007497.1 + 42495 0.7 0.713709
Target:  5'- uGaCGGCU-CGACGUGCgGACGAgcuUGGGc -3'
miRNA:   3'- gC-GCUGAuGCUGCGCGaUUGCU---AUCC- -5'
33059 5' -51 NC_007497.1 + 23270 0.73 0.545453
Target:  5'- gGCGGCUGCGACGaGCUGGuCGAc--- -3'
miRNA:   3'- gCGCUGAUGCUGCgCGAUU-GCUaucc -5'
33059 5' -51 NC_007497.1 + 21592 0.73 0.523557
Target:  5'- gCGCucGACUACGACGCGCgcAUGAa--- -3'
miRNA:   3'- -GCG--CUGAUGCUGCGCGauUGCUaucc -5'
33059 5' -51 NC_007497.1 + 27012 0.74 0.460144
Target:  5'- gCGCGACUguGCGACGC-CcGACGGcAGGa -3'
miRNA:   3'- -GCGCUGA--UGCUGCGcGaUUGCUaUCC- -5'
33059 5' -51 NC_007497.1 + 16733 0.69 0.746316
Target:  5'- aCGCGA--GCGGCGCGCUcccGGCG-UAGc -3'
miRNA:   3'- -GCGCUgaUGCUGCGCGA---UUGCuAUCc -5'
33059 5' -51 NC_007497.1 + 3153 0.7 0.713709
Target:  5'- -uCGACgGCGACGCGCUGAuCGAc--- -3'
miRNA:   3'- gcGCUGaUGCUGCGCGAUU-GCUaucc -5'
33059 5' -51 NC_007497.1 + 30996 0.7 0.680337
Target:  5'- aCGCGA--ACGGCGUGaccCUAACGAUGGc -3'
miRNA:   3'- -GCGCUgaUGCUGCGC---GAUUGCUAUCc -5'
33059 5' -51 NC_007497.1 + 31054 0.72 0.567635
Target:  5'- aCGCuACUGCuGAC-CGCUGGCGaAUGGGa -3'
miRNA:   3'- -GCGcUGAUG-CUGcGCGAUUGC-UAUCC- -5'
33059 5' -51 NC_007497.1 + 40299 0.73 0.534465
Target:  5'- uGcCGACgucCGACGCGUUGGCGA-AGGu -3'
miRNA:   3'- gC-GCUGau-GCUGCGCGAUUGCUaUCC- -5'
33059 5' -51 NC_007497.1 + 15713 0.74 0.480854
Target:  5'- --aGACUGCuACGUGCguugGACGGUGGGa -3'
miRNA:   3'- gcgCUGAUGcUGCGCGa---UUGCUAUCC- -5'
33059 5' -51 NC_007497.1 + 33111 0.74 0.470441
Target:  5'- gCGCGAgaGCuGGcCGCGCUGuCGAUGGGc -3'
miRNA:   3'- -GCGCUgaUG-CU-GCGCGAUuGCUAUCC- -5'
33059 5' -51 NC_007497.1 + 4563 0.66 0.914635
Target:  5'- aGCGuCguuuucgACGACGCGCUGAUccaucGGGu -3'
miRNA:   3'- gCGCuGa------UGCUGCGCGAUUGcua--UCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.