miRNA display CGI


Results 1 - 20 of 45 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33059 5' -51 NC_007497.1 + 449 0.69 0.756957
Target:  5'- uCGCGACacGCGACGCaGCgAGCGAUu-- -3'
miRNA:   3'- -GCGCUGa-UGCUGCG-CGaUUGCUAucc -5'
33059 5' -51 NC_007497.1 + 3153 0.7 0.713709
Target:  5'- -uCGACgGCGACGCGCUGAuCGAc--- -3'
miRNA:   3'- gcGCUGaUGCUGCGCGAUU-GCUaucc -5'
33059 5' -51 NC_007497.1 + 3377 0.66 0.886496
Target:  5'- uGCGGCgcACuGCGCGCgGGCGAUAu- -3'
miRNA:   3'- gCGCUGa-UGcUGCGCGaUUGCUAUcc -5'
33059 5' -51 NC_007497.1 + 4175 0.66 0.901134
Target:  5'- uGCGGugcGCGACGCGCgggcCGGaAGGa -3'
miRNA:   3'- gCGCUga-UGCUGCGCGauu-GCUaUCC- -5'
33059 5' -51 NC_007497.1 + 4441 0.69 0.788021
Target:  5'- cCGCGGCUACaaGAUGCG-UAGCGAgacgccGGa -3'
miRNA:   3'- -GCGCUGAUG--CUGCGCgAUUGCUau----CC- -5'
33059 5' -51 NC_007497.1 + 4563 0.66 0.914635
Target:  5'- aGCGuCguuuucgACGACGCGCUGAUccaucGGGu -3'
miRNA:   3'- gCGCuGa------UGCUGCGCGAUUGcua--UCC- -5'
33059 5' -51 NC_007497.1 + 5006 0.68 0.836214
Target:  5'- gGCGGCcACGugGCGC-AAC--UGGGu -3'
miRNA:   3'- gCGCUGaUGCugCGCGaUUGcuAUCC- -5'
33059 5' -51 NC_007497.1 + 10166 0.66 0.914635
Target:  5'- aGCGGCagccUGCG-CGCGCaGAUGGcuUGGGc -3'
miRNA:   3'- gCGCUG----AUGCuGCGCGaUUGCU--AUCC- -5'
33059 5' -51 NC_007497.1 + 14112 0.68 0.836214
Target:  5'- uCGUGA--GCGugGCGauguCGAUGGGg -3'
miRNA:   3'- -GCGCUgaUGCugCGCgauuGCUAUCC- -5'
33059 5' -51 NC_007497.1 + 14301 0.68 0.839841
Target:  5'- gCGuCGGCUgucugaggccggagaGCGAUGCGagcaGAUGAUAGGg -3'
miRNA:   3'- -GC-GCUGA---------------UGCUGCGCga--UUGCUAUCC- -5'
33059 5' -51 NC_007497.1 + 15441 0.68 0.836214
Target:  5'- aCGCGAUacagACGAuuguuuguaauCGCGCaauacaGGCGAUAGGc -3'
miRNA:   3'- -GCGCUGa---UGCU-----------GCGCGa-----UUGCUAUCC- -5'
33059 5' -51 NC_007497.1 + 15523 0.66 0.893955
Target:  5'- aCGCGAaUGCGACaGCGCUucccuuGGCGAc--- -3'
miRNA:   3'- -GCGCUgAUGCUG-CGCGA------UUGCUaucc -5'
33059 5' -51 NC_007497.1 + 15713 0.74 0.480854
Target:  5'- --aGACUGCuACGUGCguugGACGGUGGGa -3'
miRNA:   3'- gcgCUGAUGcUGCGCGa---UUGCUAUCC- -5'
33059 5' -51 NC_007497.1 + 16733 0.69 0.746316
Target:  5'- aCGCGA--GCGGCGCGCUcccGGCG-UAGc -3'
miRNA:   3'- -GCGCUgaUGCUGCGCGA---UUGCuAUCc -5'
33059 5' -51 NC_007497.1 + 17268 0.66 0.908028
Target:  5'- gGCGGCUGCGGgGCGgccGCGAUu-- -3'
miRNA:   3'- gCGCUGAUGCUgCGCgauUGCUAucc -5'
33059 5' -51 NC_007497.1 + 19078 0.66 0.901134
Target:  5'- aGCGGCUucgagaGCGGCGCGaaguucggUGACGGUuuGGc -3'
miRNA:   3'- gCGCUGA------UGCUGCGCg-------AUUGCUAu-CC- -5'
33059 5' -51 NC_007497.1 + 21592 0.73 0.523557
Target:  5'- gCGCucGACUACGACGCGCgcAUGAa--- -3'
miRNA:   3'- -GCG--CUGAUGCUGCGCGauUGCUaucc -5'
33059 5' -51 NC_007497.1 + 22095 0.66 0.908028
Target:  5'- aGCaGGCgcCGAaaaGCGCUcGAUGGUGGGc -3'
miRNA:   3'- gCG-CUGauGCUg--CGCGA-UUGCUAUCC- -5'
33059 5' -51 NC_007497.1 + 22869 0.66 0.886496
Target:  5'- gCGCGcGCUGCGACGU---AACGAgcGGc -3'
miRNA:   3'- -GCGC-UGAUGCUGCGcgaUUGCUauCC- -5'
33059 5' -51 NC_007497.1 + 23170 1.12 0.001577
Target:  5'- gCGCGACUACGACGCGCUAACGAUAGGg -3'
miRNA:   3'- -GCGCUGAUGCUGCGCGAUUGCUAUCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.