Results 1 - 20 of 45 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
33059 | 5' | -51 | NC_007497.1 | + | 19078 | 0.66 | 0.901134 |
Target: 5'- aGCGGCUucgagaGCGGCGCGaaguucggUGACGGUuuGGc -3' miRNA: 3'- gCGCUGA------UGCUGCGCg-------AUUGCUAu-CC- -5' |
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33059 | 5' | -51 | NC_007497.1 | + | 27280 | 0.66 | 0.908028 |
Target: 5'- uCGCGA-UACGAgGCGggAACGGUGu- -3' miRNA: 3'- -GCGCUgAUGCUgCGCgaUUGCUAUcc -5' |
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33059 | 5' | -51 | NC_007497.1 | + | 25426 | 0.66 | 0.912684 |
Target: 5'- gCGCGuCUAUGACggaaacggcaugcuGCGCguGCGuAUGGGg -3' miRNA: 3'- -GCGCuGAUGCUG--------------CGCGauUGC-UAUCC- -5' |
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33059 | 5' | -51 | NC_007497.1 | + | 26585 | 0.66 | 0.908028 |
Target: 5'- gCGCGugUGCG-CGCGCagAACGu---- -3' miRNA: 3'- -GCGCugAUGCuGCGCGa-UUGCuaucc -5' |
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33059 | 5' | -51 | NC_007497.1 | + | 4563 | 0.66 | 0.914635 |
Target: 5'- aGCGuCguuuucgACGACGCGCUGAUccaucGGGu -3' miRNA: 3'- gCGCuGa------UGCUGCGCGAUUGcua--UCC- -5' |
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33059 | 5' | -51 | NC_007497.1 | + | 10166 | 0.66 | 0.914635 |
Target: 5'- aGCGGCagccUGCG-CGCGCaGAUGGcuUGGGc -3' miRNA: 3'- gCGCUG----AUGCuGCGCGaUUGCU--AUCC- -5' |
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33059 | 5' | -51 | NC_007497.1 | + | 35180 | 0.66 | 0.893955 |
Target: 5'- uGCGGCUGCGGCGaaacugcagaaCGCacaGGCGGcggAGGu -3' miRNA: 3'- gCGCUGAUGCUGC-----------GCGa--UUGCUa--UCC- -5' |
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33059 | 5' | -51 | NC_007497.1 | + | 40123 | 0.66 | 0.893955 |
Target: 5'- gGCGACgUGCaGGcCGCGCUGAacaaGGgcgAGGa -3' miRNA: 3'- gCGCUG-AUG-CU-GCGCGAUUg---CUa--UCC- -5' |
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33059 | 5' | -51 | NC_007497.1 | + | 4175 | 0.66 | 0.901134 |
Target: 5'- uGCGGugcGCGACGCGCgggcCGGaAGGa -3' miRNA: 3'- gCGCUga-UGCUGCGCGauu-GCUaUCC- -5' |
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33059 | 5' | -51 | NC_007497.1 | + | 35824 | 0.66 | 0.914635 |
Target: 5'- aGCGGCUGCcGCGUuGCUugcGCGAUGc- -3' miRNA: 3'- gCGCUGAUGcUGCG-CGAu--UGCUAUcc -5' |
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33059 | 5' | -51 | NC_007497.1 | + | 27271 | 0.66 | 0.914635 |
Target: 5'- uGCGcCUGCGACGUGCaccCGAa--- -3' miRNA: 3'- gCGCuGAUGCUGCGCGauuGCUaucc -5' |
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33059 | 5' | -51 | NC_007497.1 | + | 39155 | 0.66 | 0.893955 |
Target: 5'- uCGCGACggccCGACGCuuacucGCUGGCGGc--- -3' miRNA: 3'- -GCGCUGau--GCUGCG------CGAUUGCUaucc -5' |
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33059 | 5' | -51 | NC_007497.1 | + | 26860 | 0.66 | 0.914635 |
Target: 5'- aCGCGGCgaucgacgACGGCGCGCagauucagcAGCGGccGGu -3' miRNA: 3'- -GCGCUGa-------UGCUGCGCGa--------UUGCUauCC- -5' |
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33059 | 5' | -51 | NC_007497.1 | + | 41427 | 0.66 | 0.914635 |
Target: 5'- cCGCGAgaugcuggauUUGCcuCGCGCUGACGAUccGGu -3' miRNA: 3'- -GCGCU----------GAUGcuGCGCGAUUGCUAu-CC- -5' |
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33059 | 5' | -51 | NC_007497.1 | + | 22095 | 0.66 | 0.908028 |
Target: 5'- aGCaGGCgcCGAaaaGCGCUcGAUGGUGGGc -3' miRNA: 3'- gCG-CUGauGCUg--CGCGA-UUGCUAUCC- -5' |
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33059 | 5' | -51 | NC_007497.1 | + | 15523 | 0.66 | 0.893955 |
Target: 5'- aCGCGAaUGCGACaGCGCUucccuuGGCGAc--- -3' miRNA: 3'- -GCGCUgAUGCUG-CGCGA------UUGCUaucc -5' |
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33059 | 5' | -51 | NC_007497.1 | + | 17268 | 0.66 | 0.908028 |
Target: 5'- gGCGGCUGCGGgGCGgccGCGAUu-- -3' miRNA: 3'- gCGCUGAUGCUgCGCgauUGCUAucc -5' |
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33059 | 5' | -51 | NC_007497.1 | + | 3377 | 0.66 | 0.886496 |
Target: 5'- uGCGGCgcACuGCGCGCgGGCGAUAu- -3' miRNA: 3'- gCGCUGa-UGcUGCGCGaUUGCUAUcc -5' |
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33059 | 5' | -51 | NC_007497.1 | + | 22869 | 0.66 | 0.886496 |
Target: 5'- gCGCGcGCUGCGACGU---AACGAgcGGc -3' miRNA: 3'- -GCGC-UGAUGCUGCGcgaUUGCUauCC- -5' |
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33059 | 5' | -51 | NC_007497.1 | + | 32879 | 0.66 | 0.901134 |
Target: 5'- gCGCGAU--UGGCGUGUUGGCGcgAGc -3' miRNA: 3'- -GCGCUGauGCUGCGCGAUUGCuaUCc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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