miRNA display CGI


Results 21 - 40 of 89 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33060 3' -44.4 NC_007497.1 + 13258 0.8 0.506948
Target:  5'- --uGAUGUAGA-CGACGAUGAGCAGCg -3'
miRNA:   3'- uuuCUACGUUUgGUUGUUGCUUGUCG- -5'
33060 3' -44.4 NC_007497.1 + 13493 0.69 0.979266
Target:  5'- -cAGGUGCAGACCG-CGAUauuCGGCu -3'
miRNA:   3'- uuUCUACGUUUGGUuGUUGcuuGUCG- -5'
33060 3' -44.4 NC_007497.1 + 13598 0.74 0.841509
Target:  5'- -cAGGUGUucGACCuuccgcgcgcaccaGACGGCGAACAGCc -3'
miRNA:   3'- uuUCUACGu-UUGG--------------UUGUUGCUUGUCG- -5'
33060 3' -44.4 NC_007497.1 + 13623 0.66 0.996924
Target:  5'- gGAAGA-GCGGGCCGccGCAugGGccGCcGCa -3'
miRNA:   3'- -UUUCUaCGUUUGGU--UGUugCU--UGuCG- -5'
33060 3' -44.4 NC_007497.1 + 14175 0.68 0.988077
Target:  5'- --cGA-GCAGGCCGcCGGCGuccacGCAGCa -3'
miRNA:   3'- uuuCUaCGUUUGGUuGUUGCu----UGUCG- -5'
33060 3' -44.4 NC_007497.1 + 14618 0.69 0.979266
Target:  5'- cGAAGuagucGCGGAgCGACAugcCGGGCAGCg -3'
miRNA:   3'- -UUUCua---CGUUUgGUUGUu--GCUUGUCG- -5'
33060 3' -44.4 NC_007497.1 + 14919 0.71 0.943342
Target:  5'- cGAGAUuUcgGCCAuguugggcgauGCGGCGAACAGCg -3'
miRNA:   3'- uUUCUAcGuuUGGU-----------UGUUGCUUGUCG- -5'
33060 3' -44.4 NC_007497.1 + 15336 0.7 0.948599
Target:  5'- -uGGAUGCGcGCCucGCGGCGcuCGGCc -3'
miRNA:   3'- uuUCUACGUuUGGu-UGUUGCuuGUCG- -5'
33060 3' -44.4 NC_007497.1 + 15596 0.71 0.943342
Target:  5'- --cGAUGCAGgugguGCUggAACAGCGAGCcgAGCg -3'
miRNA:   3'- uuuCUACGUU-----UGG--UUGUUGCUUG--UCG- -5'
33060 3' -44.4 NC_007497.1 + 15874 0.67 0.99252
Target:  5'- --uGAUGCuGAugCAACGaauugaggauGCGAugAGCu -3'
miRNA:   3'- uuuCUACG-UUugGUUGU----------UGCUugUCG- -5'
33060 3' -44.4 NC_007497.1 + 15876 0.7 0.948599
Target:  5'- uGAAGGccgcugcgcUGCAGACCuguuCAACGugcGACGGCg -3'
miRNA:   3'- -UUUCU---------ACGUUUGGuu--GUUGC---UUGUCG- -5'
33060 3' -44.4 NC_007497.1 + 16127 0.72 0.918904
Target:  5'- -uGGAUGCGgcgcauGGCCgAGCAugGaAACGGCg -3'
miRNA:   3'- uuUCUACGU------UUGG-UUGUugC-UUGUCG- -5'
33060 3' -44.4 NC_007497.1 + 16621 0.68 0.982062
Target:  5'- cAGGGAUGCAcccgaaugucaaaauGCCGGCGuccGCGAACuuGCg -3'
miRNA:   3'- -UUUCUACGUu--------------UGGUUGU---UGCUUGu-CG- -5'
33060 3' -44.4 NC_007497.1 + 16763 0.72 0.896985
Target:  5'- aAAAGAgccccGCAcccgcGCCGGCgGACGAGCAGCc -3'
miRNA:   3'- -UUUCUa----CGUu----UGGUUG-UUGCUUGUCG- -5'
33060 3' -44.4 NC_007497.1 + 16990 0.74 0.821501
Target:  5'- cGAGGGUGCGAACgaAGCAucGCGAguauguguaauaggGCAGCa -3'
miRNA:   3'- -UUUCUACGUUUGg-UUGU--UGCU--------------UGUCG- -5'
33060 3' -44.4 NC_007497.1 + 17069 0.72 0.896985
Target:  5'- gGAAGggGCgGAACCGAUGGCGAuccCGGCc -3'
miRNA:   3'- -UUUCuaCG-UUUGGUUGUUGCUu--GUCG- -5'
33060 3' -44.4 NC_007497.1 + 17096 0.69 0.978996
Target:  5'- -cAGAUGCGGcgcggccugcuuGCCAgccugcgcagaacACAuCGAACGGCg -3'
miRNA:   3'- uuUCUACGUU------------UGGU-------------UGUuGCUUGUCG- -5'
33060 3' -44.4 NC_007497.1 + 17243 0.67 0.994664
Target:  5'- -----gGcCGGGCUGACgGACGAGCAGCg -3'
miRNA:   3'- uuucuaC-GUUUGGUUG-UUGCUUGUCG- -5'
33060 3' -44.4 NC_007497.1 + 18355 0.66 0.996924
Target:  5'- uGGGGggGCAAAgCAACuuGCGGaucguuACGGCg -3'
miRNA:   3'- -UUUCuaCGUUUgGUUGu-UGCU------UGUCG- -5'
33060 3' -44.4 NC_007497.1 + 19759 0.85 0.304324
Target:  5'- cGAAGcAUGCgGAGCCGACGACGGACAuGCa -3'
miRNA:   3'- -UUUC-UACG-UUUGGUUGUUGCUUGU-CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.