miRNA display CGI


Results 1 - 20 of 89 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33060 3' -44.4 NC_007497.1 + 223 0.69 0.970009
Target:  5'- -cAGAcgcucUGCAAaacgcACCAcgACAGCGAaaaGCAGCg -3'
miRNA:   3'- uuUCU-----ACGUU-----UGGU--UGUUGCU---UGUCG- -5'
33060 3' -44.4 NC_007497.1 + 464 0.67 0.993556
Target:  5'- cAAGAgcaGCAGugCGGCGcgcgguuacgguuACGAAUGGCa -3'
miRNA:   3'- uUUCUa--CGUUugGUUGU-------------UGCUUGUCG- -5'
33060 3' -44.4 NC_007497.1 + 1969 0.69 0.970009
Target:  5'- ----cUGCGGGCCGGCAcaguuucaaGCGAagcACGGCa -3'
miRNA:   3'- uuucuACGUUUGGUUGU---------UGCU---UGUCG- -5'
33060 3' -44.4 NC_007497.1 + 2496 0.66 0.996924
Target:  5'- -cAGcgGCGcACCGGCAcugcuaagcGCGAcaucGCGGCa -3'
miRNA:   3'- uuUCuaCGUuUGGUUGU---------UGCU----UGUCG- -5'
33060 3' -44.4 NC_007497.1 + 2542 0.67 0.99252
Target:  5'- cGGGcGUGCGcGCCGGCGGCc-GCGGCg -3'
miRNA:   3'- uUUC-UACGUuUGGUUGUUGcuUGUCG- -5'
33060 3' -44.4 NC_007497.1 + 2620 0.67 0.991216
Target:  5'- cAAGGAUGCGccgcGGCCGcCGGCGcGCAcGCc -3'
miRNA:   3'- -UUUCUACGU----UUGGUuGUUGCuUGU-CG- -5'
33060 3' -44.4 NC_007497.1 + 3332 0.66 0.995532
Target:  5'- cGAGAUGaCAAacgGCCGugGCAcCGAGgAGCa -3'
miRNA:   3'- uUUCUAC-GUU---UGGU--UGUuGCUUgUCG- -5'
33060 3' -44.4 NC_007497.1 + 4015 0.67 0.99252
Target:  5'- --cGAUGCGggUCGACGccggcACGAagaacgucgggACGGCa -3'
miRNA:   3'- uuuCUACGUuuGGUUGU-----UGCU-----------UGUCG- -5'
33060 3' -44.4 NC_007497.1 + 4266 0.68 0.988077
Target:  5'- uGAGcgGCGugugcgucgccGAUCAGC-ACGGGCGGCu -3'
miRNA:   3'- uUUCuaCGU-----------UUGGUUGuUGCUUGUCG- -5'
33060 3' -44.4 NC_007497.1 + 4509 0.66 0.997472
Target:  5'- -uGGGUGCuGAUCGGCGG-GAAgAGCg -3'
miRNA:   3'- uuUCUACGuUUGGUUGUUgCUUgUCG- -5'
33060 3' -44.4 NC_007497.1 + 4961 0.67 0.993664
Target:  5'- --cGGUGC-GGCCGuCGGCGGaggcaACAGCa -3'
miRNA:   3'- uuuCUACGuUUGGUuGUUGCU-----UGUCG- -5'
33060 3' -44.4 NC_007497.1 + 6106 0.76 0.747927
Target:  5'- cGAAGAcaugGgAGACCAACGGCGAcauCGGCa -3'
miRNA:   3'- -UUUCUa---CgUUUGGUUGUUGCUu--GUCG- -5'
33060 3' -44.4 NC_007497.1 + 7362 0.67 0.994664
Target:  5'- gAGGGcgGCGAACUuGCuGCGAGuauCGGCa -3'
miRNA:   3'- -UUUCuaCGUUUGGuUGuUGCUU---GUCG- -5'
33060 3' -44.4 NC_007497.1 + 7858 0.68 0.98108
Target:  5'- --cGAUGCAAauacccgcuucucaGCCGGCAACu--CGGCg -3'
miRNA:   3'- uuuCUACGUU--------------UGGUUGUUGcuuGUCG- -5'
33060 3' -44.4 NC_007497.1 + 8677 0.66 0.996281
Target:  5'- cGAGAUcaaGCGAGCUAACGAgGc-CGGCg -3'
miRNA:   3'- uUUCUA---CGUUUGGUUGUUgCuuGUCG- -5'
33060 3' -44.4 NC_007497.1 + 8873 0.66 0.997472
Target:  5'- --uGAgGCcgGGACCGGCGAUGAaaucACGGCu -3'
miRNA:   3'- uuuCUaCG--UUUGGUUGUUGCU----UGUCG- -5'
33060 3' -44.4 NC_007497.1 + 10199 0.69 0.973049
Target:  5'- --uGGUGCGAGCaagAGCAAuuaugcugcgaucCGAGCGGCa -3'
miRNA:   3'- uuuCUACGUUUGg--UUGUU-------------GCUUGUCG- -5'
33060 3' -44.4 NC_007497.1 + 10559 0.65 0.997893
Target:  5'- uGGGGUGCAcggguugucgagcAGCCA--GACG-GCAGCg -3'
miRNA:   3'- uUUCUACGU-------------UUGGUugUUGCuUGUCG- -5'
33060 3' -44.4 NC_007497.1 + 11255 0.66 0.997472
Target:  5'- --uGAUGCGAGC--ACAACGAAUAu- -3'
miRNA:   3'- uuuCUACGUUUGguUGUUGCUUGUcg -5'
33060 3' -44.4 NC_007497.1 + 12000 0.67 0.99252
Target:  5'- --uGAUGCcguGACgAuuGCcGCGAGCGGCg -3'
miRNA:   3'- uuuCUACGu--UUGgU--UGuUGCUUGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.