Results 1 - 20 of 89 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
33060 | 3' | -44.4 | NC_007497.1 | + | 23419 | 1.11 | 0.007543 |
Target: 5'- gAAAGAUGCAAACCAACAACGAACAGCc -3' miRNA: 3'- -UUUCUACGUUUGGUUGUUGCUUGUCG- -5' |
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33060 | 3' | -44.4 | NC_007497.1 | + | 19759 | 0.85 | 0.304324 |
Target: 5'- cGAAGcAUGCgGAGCCGACGACGGACAuGCa -3' miRNA: 3'- -UUUC-UACG-UUUGGUUGUUGCUUGU-CG- -5' |
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33060 | 3' | -44.4 | NC_007497.1 | + | 13258 | 0.8 | 0.506948 |
Target: 5'- --uGAUGUAGA-CGACGAUGAGCAGCg -3' miRNA: 3'- uuuCUACGUUUgGUUGUUGCUUGUCG- -5' |
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33060 | 3' | -44.4 | NC_007497.1 | + | 6106 | 0.76 | 0.747927 |
Target: 5'- cGAAGAcaugGgAGACCAACGGCGAcauCGGCa -3' miRNA: 3'- -UUUCUa---CgUUUGGUUGUUGCUu--GUCG- -5' |
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33060 | 3' | -44.4 | NC_007497.1 | + | 41236 | 0.75 | 0.759439 |
Target: 5'- cGGGcgGCGAacGCCGACGAUGcGGCGGCg -3' miRNA: 3'- uUUCuaCGUU--UGGUUGUUGC-UUGUCG- -5' |
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33060 | 3' | -44.4 | NC_007497.1 | + | 30321 | 0.75 | 0.770789 |
Target: 5'- --cGA-GCAGAaaAGCGACGAACAGCc -3' miRNA: 3'- uuuCUaCGUUUggUUGUUGCUUGUCG- -5' |
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33060 | 3' | -44.4 | NC_007497.1 | + | 23300 | 0.75 | 0.781962 |
Target: 5'- ----cUGCAGgcuGCCAGCGgcagcACGAGCAGCa -3' miRNA: 3'- uuucuACGUU---UGGUUGU-----UGCUUGUCG- -5' |
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33060 | 3' | -44.4 | NC_007497.1 | + | 16990 | 0.74 | 0.821501 |
Target: 5'- cGAGGGUGCGAACgaAGCAucGCGAguauguguaauaggGCAGCa -3' miRNA: 3'- -UUUCUACGUUUGg-UUGU--UGCU--------------UGUCG- -5' |
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33060 | 3' | -44.4 | NC_007497.1 | + | 13598 | 0.74 | 0.841509 |
Target: 5'- -cAGGUGUucGACCuuccgcgcgcaccaGACGGCGAACAGCc -3' miRNA: 3'- uuUCUACGu-UUGG--------------UUGUUGCUUGUCG- -5' |
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33060 | 3' | -44.4 | NC_007497.1 | + | 38838 | 0.74 | 0.844419 |
Target: 5'- gGAGGAUGCGauGACCAccGCGAuCGAGgcCGGCa -3' miRNA: 3'- -UUUCUACGU--UUGGU--UGUU-GCUU--GUCG- -5' |
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33060 | 3' | -44.4 | NC_007497.1 | + | 36837 | 0.73 | 0.863162 |
Target: 5'- cGAGGcgGCGGGCgucgagccggaCGACGACGAACAGa -3' miRNA: 3'- -UUUCuaCGUUUG-----------GUUGUUGCUUGUCg -5' |
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33060 | 3' | -44.4 | NC_007497.1 | + | 22866 | 0.72 | 0.889009 |
Target: 5'- --cGGUGUuccAGCUAACGACGuGCAGCc -3' miRNA: 3'- uuuCUACGu--UUGGUUGUUGCuUGUCG- -5' |
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33060 | 3' | -44.4 | NC_007497.1 | + | 16763 | 0.72 | 0.896985 |
Target: 5'- aAAAGAgccccGCAcccgcGCCGGCgGACGAGCAGCc -3' miRNA: 3'- -UUUCUa----CGUu----UGGUUG-UUGCUUGUCG- -5' |
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33060 | 3' | -44.4 | NC_007497.1 | + | 17069 | 0.72 | 0.896985 |
Target: 5'- gGAAGggGCgGAACCGAUGGCGAuccCGGCc -3' miRNA: 3'- -UUUCuaCG-UUUGGUUGUUGCUu--GUCG- -5' |
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33060 | 3' | -44.4 | NC_007497.1 | + | 16127 | 0.72 | 0.918904 |
Target: 5'- -uGGAUGCGgcgcauGGCCgAGCAugGaAACGGCg -3' miRNA: 3'- uuUCUACGU------UUGG-UUGUugC-UUGUCG- -5' |
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33060 | 3' | -44.4 | NC_007497.1 | + | 15596 | 0.71 | 0.943342 |
Target: 5'- --cGAUGCAGgugguGCUggAACAGCGAGCcgAGCg -3' miRNA: 3'- uuuCUACGUU-----UGG--UUGUUGCUUG--UCG- -5' |
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33060 | 3' | -44.4 | NC_007497.1 | + | 14919 | 0.71 | 0.943342 |
Target: 5'- cGAGAUuUcgGCCAuguugggcgauGCGGCGAACAGCg -3' miRNA: 3'- uUUCUAcGuuUGGU-----------UGUUGCUUGUCG- -5' |
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33060 | 3' | -44.4 | NC_007497.1 | + | 36185 | 0.71 | 0.943342 |
Target: 5'- gGAGGAUGCGugGGCUGGCGucgACGGcCGGCg -3' miRNA: 3'- -UUUCUACGU--UUGGUUGU---UGCUuGUCG- -5' |
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33060 | 3' | -44.4 | NC_007497.1 | + | 15876 | 0.7 | 0.948599 |
Target: 5'- uGAAGGccgcugcgcUGCAGACCuguuCAACGugcGACGGCg -3' miRNA: 3'- -UUUCU---------ACGUUUGGuu--GUUGC---UUGUCG- -5' |
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33060 | 3' | -44.4 | NC_007497.1 | + | 15336 | 0.7 | 0.948599 |
Target: 5'- -uGGAUGCGcGCCucGCGGCGcuCGGCc -3' miRNA: 3'- uuUCUACGUuUGGu-UGUUGCuuGUCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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