Results 1 - 20 of 89 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
33060 | 3' | -44.4 | NC_007497.1 | + | 12000 | 0.67 | 0.99252 |
Target: 5'- --uGAUGCcguGACgAuuGCcGCGAGCGGCg -3' miRNA: 3'- uuuCUACGu--UUGgU--UGuUGCUUGUCG- -5' |
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33060 | 3' | -44.4 | NC_007497.1 | + | 34569 | 0.68 | 0.984131 |
Target: 5'- --uGA-GCGAGCCuGCG-CGGGCGGCc -3' miRNA: 3'- uuuCUaCGUUUGGuUGUuGCUUGUCG- -5' |
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33060 | 3' | -44.4 | NC_007497.1 | + | 4266 | 0.68 | 0.988077 |
Target: 5'- uGAGcgGCGugugcgucgccGAUCAGC-ACGGGCGGCu -3' miRNA: 3'- uUUCuaCGU-----------UUGGUUGuUGCUUGUCG- -5' |
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33060 | 3' | -44.4 | NC_007497.1 | + | 38609 | 0.68 | 0.988077 |
Target: 5'- --cGAUGCGGcCgCAACAGCGcacgcgcguuaAGCGGCa -3' miRNA: 3'- uuuCUACGUUuG-GUUGUUGC-----------UUGUCG- -5' |
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33060 | 3' | -44.4 | NC_007497.1 | + | 21312 | 0.68 | 0.98974 |
Target: 5'- gGAGGGUGacgaugGAACCGcGCGcCGGACGGCu -3' miRNA: 3'- -UUUCUACg-----UUUGGU-UGUuGCUUGUCG- -5' |
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33060 | 3' | -44.4 | NC_007497.1 | + | 31095 | 0.67 | 0.991077 |
Target: 5'- --cGGUGCAauuccaucuuuccGACCAACcACGGAaAGCu -3' miRNA: 3'- uuuCUACGU-------------UUGGUUGuUGCUUgUCG- -5' |
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33060 | 3' | -44.4 | NC_007497.1 | + | 26881 | 0.67 | 0.99252 |
Target: 5'- ----cUGCAcGCUGACGACGcgguACAGCu -3' miRNA: 3'- uuucuACGUuUGGUUGUUGCu---UGUCG- -5' |
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33060 | 3' | -44.4 | NC_007497.1 | + | 2542 | 0.67 | 0.99252 |
Target: 5'- cGGGcGUGCGcGCCGGCGGCc-GCGGCg -3' miRNA: 3'- uUUC-UACGUuUGGUUGUUGcuUGUCG- -5' |
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33060 | 3' | -44.4 | NC_007497.1 | + | 15874 | 0.67 | 0.99252 |
Target: 5'- --uGAUGCuGAugCAACGaauugaggauGCGAugAGCu -3' miRNA: 3'- uuuCUACG-UUugGUUGU----------UGCUugUCG- -5' |
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33060 | 3' | -44.4 | NC_007497.1 | + | 7858 | 0.68 | 0.98108 |
Target: 5'- --cGAUGCAAauacccgcuucucaGCCGGCAACu--CGGCg -3' miRNA: 3'- uuuCUACGUU--------------UGGUUGUUGcuuGUCG- -5' |
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33060 | 3' | -44.4 | NC_007497.1 | + | 27985 | 0.69 | 0.979266 |
Target: 5'- --cGAUGUucACCGuguCGGCGAuCAGCg -3' miRNA: 3'- uuuCUACGuuUGGUu--GUUGCUuGUCG- -5' |
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33060 | 3' | -44.4 | NC_007497.1 | + | 19907 | 0.69 | 0.979266 |
Target: 5'- cGAGucagGcCAGACCGucguGCGAGCAGCg -3' miRNA: 3'- uUUCua--C-GUUUGGUugu-UGCUUGUCG- -5' |
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33060 | 3' | -44.4 | NC_007497.1 | + | 23300 | 0.75 | 0.781962 |
Target: 5'- ----cUGCAGgcuGCCAGCGgcagcACGAGCAGCa -3' miRNA: 3'- uuucuACGUU---UGGUUGU-----UGCUUGUCG- -5' |
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33060 | 3' | -44.4 | NC_007497.1 | + | 17069 | 0.72 | 0.896985 |
Target: 5'- gGAAGggGCgGAACCGAUGGCGAuccCGGCc -3' miRNA: 3'- -UUUCuaCG-UUUGGUUGUUGCUu--GUCG- -5' |
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33060 | 3' | -44.4 | NC_007497.1 | + | 16763 | 0.72 | 0.896985 |
Target: 5'- aAAAGAgccccGCAcccgcGCCGGCgGACGAGCAGCc -3' miRNA: 3'- -UUUCUa----CGUu----UGGUUG-UUGCUUGUCG- -5' |
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33060 | 3' | -44.4 | NC_007497.1 | + | 16127 | 0.72 | 0.918904 |
Target: 5'- -uGGAUGCGgcgcauGGCCgAGCAugGaAACGGCg -3' miRNA: 3'- uuUCUACGU------UUGG-UUGUugC-UUGUCG- -5' |
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33060 | 3' | -44.4 | NC_007497.1 | + | 15596 | 0.71 | 0.943342 |
Target: 5'- --cGAUGCAGgugguGCUggAACAGCGAGCcgAGCg -3' miRNA: 3'- uuuCUACGUU-----UGG--UUGUUGCUUG--UCG- -5' |
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33060 | 3' | -44.4 | NC_007497.1 | + | 29723 | 0.7 | 0.962801 |
Target: 5'- -cGGAUGCGAaugcACCAucGCAACGAuuucccccaugucuuCGGCg -3' miRNA: 3'- uuUCUACGUU----UGGU--UGUUGCUu--------------GUCG- -5' |
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33060 | 3' | -44.4 | NC_007497.1 | + | 20258 | 0.7 | 0.964012 |
Target: 5'- ---aGUGCGGAUCGGCAaauggaauacgcggcGCGAugGGCg -3' miRNA: 3'- uuucUACGUUUGGUUGU---------------UGCUugUCG- -5' |
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33060 | 3' | -44.4 | NC_007497.1 | + | 13493 | 0.69 | 0.979266 |
Target: 5'- -cAGGUGCAGACCG-CGAUauuCGGCu -3' miRNA: 3'- uuUCUACGUUUGGUuGUUGcuuGUCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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