Results 1 - 20 of 89 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
33060 | 3' | -44.4 | NC_007497.1 | + | 10559 | 0.65 | 0.997893 |
Target: 5'- uGGGGUGCAcggguugucgagcAGCCA--GACG-GCAGCg -3' miRNA: 3'- uUUCUACGU-------------UUGGUugUUGCuUGUCG- -5' |
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33060 | 3' | -44.4 | NC_007497.1 | + | 36368 | 0.66 | 0.995532 |
Target: 5'- cGAAGGUGaagguuGCCGACaugaugccgaaGugGGGCGGCg -3' miRNA: 3'- -UUUCUACguu---UGGUUG-----------UugCUUGUCG- -5' |
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33060 | 3' | -44.4 | NC_007497.1 | + | 44776 | 0.66 | 0.996741 |
Target: 5'- -cGGAUGCuguuuuGGCCGGCAaguccaauaaggacGCGGccaucGCGGCa -3' miRNA: 3'- uuUCUACGu-----UUGGUUGU--------------UGCU-----UGUCG- -5' |
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33060 | 3' | -44.4 | NC_007497.1 | + | 21419 | 0.66 | 0.99545 |
Target: 5'- --cGAUGCucGCUgucuagcGACAGCGAGCugAGCc -3' miRNA: 3'- uuuCUACGuuUGG-------UUGUUGCUUG--UCG- -5' |
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33060 | 3' | -44.4 | NC_007497.1 | + | 36799 | 0.66 | 0.997472 |
Target: 5'- -cGGAU-CGAGCCAgaacgcGCGGuccuCGAGCAGCg -3' miRNA: 3'- uuUCUAcGUUUGGU------UGUU----GCUUGUCG- -5' |
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33060 | 3' | -44.4 | NC_007497.1 | + | 28627 | 0.66 | 0.995532 |
Target: 5'- aAAGGGUGgAGG-CGGCGGCG-GCGGCg -3' miRNA: 3'- -UUUCUACgUUUgGUUGUUGCuUGUCG- -5' |
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33060 | 3' | -44.4 | NC_007497.1 | + | 3332 | 0.66 | 0.995532 |
Target: 5'- cGAGAUGaCAAacgGCCGugGCAcCGAGgAGCa -3' miRNA: 3'- uUUCUAC-GUU---UGGU--UGUuGCUUgUCG- -5' |
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33060 | 3' | -44.4 | NC_007497.1 | + | 34114 | 0.66 | 0.995532 |
Target: 5'- --uGGUGCAGgacgcAUCGGCAAuCGAuACGGCa -3' miRNA: 3'- uuuCUACGUU-----UGGUUGUU-GCU-UGUCG- -5' |
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33060 | 3' | -44.4 | NC_007497.1 | + | 33868 | 0.66 | 0.995532 |
Target: 5'- gAAGGggGCGAACgCAGcCGAgGcGCGGCa -3' miRNA: 3'- -UUUCuaCGUUUG-GUU-GUUgCuUGUCG- -5' |
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33060 | 3' | -44.4 | NC_007497.1 | + | 11255 | 0.66 | 0.997472 |
Target: 5'- --uGAUGCGAGC--ACAACGAAUAu- -3' miRNA: 3'- uuuCUACGUUUGguUGUUGCUUGUcg -5' |
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33060 | 3' | -44.4 | NC_007497.1 | + | 28852 | 0.66 | 0.997472 |
Target: 5'- -cGGuUGCucaaacacgAAGCCGACGACGGcCAGUg -3' miRNA: 3'- uuUCuACG---------UUUGGUUGUUGCUuGUCG- -5' |
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33060 | 3' | -44.4 | NC_007497.1 | + | 36420 | 0.66 | 0.996924 |
Target: 5'- ---aGUGCGAACuCGGCAGcCGAcaucugcgcgcGCAGCu -3' miRNA: 3'- uuucUACGUUUG-GUUGUU-GCU-----------UGUCG- -5' |
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33060 | 3' | -44.4 | NC_007497.1 | + | 43641 | 0.66 | 0.996281 |
Target: 5'- aAGAGAaguUGCAGuACUAccGCGACGugcguGACGGCa -3' miRNA: 3'- -UUUCU---ACGUU-UGGU--UGUUGC-----UUGUCG- -5' |
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33060 | 3' | -44.4 | NC_007497.1 | + | 8677 | 0.66 | 0.996281 |
Target: 5'- cGAGAUcaaGCGAGCUAACGAgGc-CGGCg -3' miRNA: 3'- uUUCUA---CGUUUGGUUGUUgCuuGUCG- -5' |
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33060 | 3' | -44.4 | NC_007497.1 | + | 44400 | 0.66 | 0.995532 |
Target: 5'- gAAGGcgGCAAGCCGguuuGCucCG-GCGGCa -3' miRNA: 3'- -UUUCuaCGUUUGGU----UGuuGCuUGUCG- -5' |
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33060 | 3' | -44.4 | NC_007497.1 | + | 38588 | 0.66 | 0.996281 |
Target: 5'- gAAAGGgagGcCGAACgAACGA-GAACGGCg -3' miRNA: 3'- -UUUCUa--C-GUUUGgUUGUUgCUUGUCG- -5' |
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33060 | 3' | -44.4 | NC_007497.1 | + | 37079 | 0.66 | 0.996281 |
Target: 5'- -cAGGUGUAcugccgcACCAugcCAACGAACAGg -3' miRNA: 3'- uuUCUACGUu------UGGUu--GUUGCUUGUCg -5' |
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33060 | 3' | -44.4 | NC_007497.1 | + | 13623 | 0.66 | 0.996924 |
Target: 5'- gGAAGA-GCGGGCCGccGCAugGGccGCcGCa -3' miRNA: 3'- -UUUCUaCGUUUGGU--UGUugCU--UGuCG- -5' |
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33060 | 3' | -44.4 | NC_007497.1 | + | 40768 | 0.66 | 0.996281 |
Target: 5'- cGAGAUGCcGGCCcgUuGCGcauACAGCu -3' miRNA: 3'- uUUCUACGuUUGGuuGuUGCu--UGUCG- -5' |
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33060 | 3' | -44.4 | NC_007497.1 | + | 18355 | 0.66 | 0.996924 |
Target: 5'- uGGGGggGCAAAgCAACuuGCGGaucguuACGGCg -3' miRNA: 3'- -UUUCuaCGUUUgGUUGu-UGCU------UGUCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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