miRNA display CGI


Results 1 - 8 of 8 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33064 3' -55.6 NC_007497.1 + 33110 0.66 0.641435
Target:  5'- cGCGAgaGCUGgCCGC-GCUGUCgauGGGCg -3'
miRNA:   3'- -CGUUg-CGACaGGCGaCGACAGg--UCUG- -5'
33064 3' -55.6 NC_007497.1 + 15323 0.66 0.641435
Target:  5'- cGCGGCGCUcggccggcGUCCGCgggaUGCgccaCAGGCg -3'
miRNA:   3'- -CGUUGCGA--------CAGGCG----ACGacagGUCUG- -5'
33064 3' -55.6 NC_007497.1 + 35228 0.66 0.606602
Target:  5'- -aAGCGCUGcCgCGCUGgUGUCUcuugagaAGGCg -3'
miRNA:   3'- cgUUGCGACaG-GCGACgACAGG-------UCUG- -5'
33064 3' -55.6 NC_007497.1 + 1745 0.66 0.585341
Target:  5'- cGCGAUGUgUGUCCGgUGCcGuUCCGGGa -3'
miRNA:   3'- -CGUUGCG-ACAGGCgACGaC-AGGUCUg -5'
33064 3' -55.6 NC_007497.1 + 15893 0.67 0.515144
Target:  5'- gGCAGCGUUGgguagcaugaaggCCGCUGCgcUgCAGACc -3'
miRNA:   3'- -CGUUGCGACa------------GGCGACGacAgGUCUG- -5'
33064 3' -55.6 NC_007497.1 + 43915 0.69 0.446595
Target:  5'- uGCAGaGCUGUCCgaGCUGUuucaUGUCCAaGAUc -3'
miRNA:   3'- -CGUUgCGACAGG--CGACG----ACAGGU-CUG- -5'
33064 3' -55.6 NC_007497.1 + 34792 0.7 0.388923
Target:  5'- cGCGACGCg--UCGCUGCUGcgCCAacgccagcGACg -3'
miRNA:   3'- -CGUUGCGacaGGCGACGACa-GGU--------CUG- -5'
33064 3' -55.6 NC_007497.1 + 25959 1.12 0.00041
Target:  5'- cGCAACGCUGUCCGCUGCUGUCCAGACu -3'
miRNA:   3'- -CGUUGCGACAGGCGACGACAGGUCUG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.