miRNA display CGI

Results 1 - 8 of 8 are showing below:
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ID	Location	Perfect MFE.*	RefSeq Acc.	strand	Start Position	R_P_ratio#	P value
	Predicted miRNA align pattern
33065	5'	-56.2	NC_007497.1	+	16850	0.66	0.563819
	Target:  5'- --cCGC-UAUCUGCgugcaccccaaAGGCGUCUACGg -3' miRNA:   3'- aaaGCGcAUAGGCG-----------UCCGCAGGUGCa -5'
33065	5'	-56.2	NC_007497.1	+	29384	0.66	0.563819
	Target:  5'- -gUCGCGg--CCGaCGucgagaaaaccGGCGUCCugGUa -3' miRNA:   3'- aaAGCGCauaGGC-GU-----------CCGCAGGugCA- -5'
33065	5'	-56.2	NC_007497.1	+	32554	0.67	0.531071
	Target:  5'- -gUCGCGgccgCCGCcGGCGgcaaCGCGUa -3' miRNA:   3'- aaAGCGCaua-GGCGuCCGCag--GUGCA- -5'
33065	5'	-56.2	NC_007497.1	+	35983	0.67	0.488551
	Target:  5'- --cCGCGUAUCCGCGaaGCGacCCGCGc -3' miRNA:   3'- aaaGCGCAUAGGCGUc-CGCa-GGUGCa -5'
33065	5'	-56.2	NC_007497.1	+	32483	0.68	0.467895
	Target:  5'- --aCGCGUugCCGCcGGCGgcggCCGCGa -3' miRNA:   3'- aaaGCGCAuaGGCGuCCGCa---GGUGCa -5'
33065	5'	-56.2	NC_007497.1	+	14178	0.69	0.390173
	Target:  5'- cUUCGagcaGg--CCGCcGGCGUCCACGc -3' miRNA:   3'- aAAGCg---CauaGGCGuCCGCAGGUGCa -5'
33065	5'	-56.2	NC_007497.1	+	15325	0.73	0.223691
	Target:  5'- -cUCGCGgcgcUCgGCcGGCGUCCGCGg -3' miRNA:   3'- aaAGCGCau--AGgCGuCCGCAGGUGCa -5'
33065	5'	-56.2	NC_007497.1	+	26344	1.04	0.001194
	Target:  5'- aUUUCGCGUAUCCGCAGGCGUCCACGUc -3' miRNA:   3'- -AAAGCGCAUAGGCGUCCGCAGGUGCA- -5'

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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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