Results 1 - 20 of 36 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
33066 | 3' | -52.5 | NC_007497.1 | + | 27376 | 1.09 | 0.001561 |
Target: 5'- aUCGCGCGCUACGGCGUCAUUAAGACGc -3' miRNA: 3'- -AGCGCGCGAUGCCGCAGUAAUUCUGC- -5' |
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33066 | 3' | -52.5 | NC_007497.1 | + | 14738 | 0.78 | 0.21606 |
Target: 5'- cUCGCGCGCggagcAUGGCGUCGgcgauccgaUAGGACGc -3' miRNA: 3'- -AGCGCGCGa----UGCCGCAGUa--------AUUCUGC- -5' |
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33066 | 3' | -52.5 | NC_007497.1 | + | 27721 | 0.76 | 0.267578 |
Target: 5'- aUCGCGCGCUACugcgaugugauGGUGUCGgacggaaAAGGCGg -3' miRNA: 3'- -AGCGCGCGAUG-----------CCGCAGUaa-----UUCUGC- -5' |
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33066 | 3' | -52.5 | NC_007497.1 | + | 33402 | 0.74 | 0.389907 |
Target: 5'- aUCGCGCaGCUGC-GCGUCG---AGGCGg -3' miRNA: 3'- -AGCGCG-CGAUGcCGCAGUaauUCUGC- -5' |
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33066 | 3' | -52.5 | NC_007497.1 | + | 34864 | 0.73 | 0.407798 |
Target: 5'- cUCGCGCGCgaucacggccgcaUACGGCGUCcc---GGCGa -3' miRNA: 3'- -AGCGCGCG-------------AUGCCGCAGuaauuCUGC- -5' |
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33066 | 3' | -52.5 | NC_007497.1 | + | 34329 | 0.7 | 0.615147 |
Target: 5'- aUCGCGCGCcucGCaGaGCGUCAUcguuccgacguucgGAGACGg -3' miRNA: 3'- -AGCGCGCGa--UG-C-CGCAGUAa-------------UUCUGC- -5' |
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33066 | 3' | -52.5 | NC_007497.1 | + | 33841 | 0.69 | 0.63326 |
Target: 5'- cCGCGCGUUGCugGGCgGUCAUaccgauGACGu -3' miRNA: 3'- aGCGCGCGAUG--CCG-CAGUAauu---CUGC- -5' |
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33066 | 3' | -52.5 | NC_007497.1 | + | 36531 | 0.69 | 0.644583 |
Target: 5'- cUG-GCGCUGCGGC-UCGgcAGGACGc -3' miRNA: 3'- aGCgCGCGAUGCCGcAGUaaUUCUGC- -5' |
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33066 | 3' | -52.5 | NC_007497.1 | + | 33510 | 0.69 | 0.655893 |
Target: 5'- gUCGCGCGUauCGGCGUCAa------- -3' miRNA: 3'- -AGCGCGCGauGCCGCAGUaauucugc -5' |
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33066 | 3' | -52.5 | NC_007497.1 | + | 21750 | 0.69 | 0.655893 |
Target: 5'- -aGCGaucaGCgGCGGCGUCGUcaauaGGGGCGa -3' miRNA: 3'- agCGCg---CGaUGCCGCAGUAa----UUCUGC- -5' |
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33066 | 3' | -52.5 | NC_007497.1 | + | 15325 | 0.69 | 0.655893 |
Target: 5'- cUCGCgGCGCUcggcCGGCGUCcgcGGGAUGc -3' miRNA: 3'- -AGCG-CGCGAu---GCCGCAGuaaUUCUGC- -5' |
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33066 | 3' | -52.5 | NC_007497.1 | + | 4269 | 0.68 | 0.678432 |
Target: 5'- uUCGUGCGC-AUGGCGcCGgaauuGGCGg -3' miRNA: 3'- -AGCGCGCGaUGCCGCaGUaauu-CUGC- -5' |
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33066 | 3' | -52.5 | NC_007497.1 | + | 42009 | 0.68 | 0.686282 |
Target: 5'- cUCGCGCGCcggcaacucgaucuUGuccccgguCGGCGUCGUguagucguAGACGa -3' miRNA: 3'- -AGCGCGCG--------------AU--------GCCGCAGUAau------UCUGC- -5' |
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33066 | 3' | -52.5 | NC_007497.1 | + | 9097 | 0.68 | 0.700785 |
Target: 5'- gCGCGgGCUGCGGUG-CAggccggGGGAUc -3' miRNA: 3'- aGCGCgCGAUGCCGCaGUaa----UUCUGc -5' |
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33066 | 3' | -52.5 | NC_007497.1 | + | 3214 | 0.68 | 0.700785 |
Target: 5'- -aGCGCGCUGgcCGGCGcCGUccgagcgcGAGACa -3' miRNA: 3'- agCGCGCGAU--GCCGCaGUAa-------UUCUGc -5' |
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33066 | 3' | -52.5 | NC_007497.1 | + | 36845 | 0.68 | 0.700785 |
Target: 5'- cCGCuGCGCgagGCGGCGggCGUcGAGcCGg -3' miRNA: 3'- aGCG-CGCGa--UGCCGCa-GUAaUUCuGC- -5' |
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33066 | 3' | -52.5 | NC_007497.1 | + | 10940 | 0.68 | 0.722855 |
Target: 5'- gCGCaGCGUU-CGGUGcgCGUUGGGAUGa -3' miRNA: 3'- aGCG-CGCGAuGCCGCa-GUAAUUCUGC- -5' |
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33066 | 3' | -52.5 | NC_007497.1 | + | 42227 | 0.68 | 0.722855 |
Target: 5'- gCGCGCGCUgcucgACGGCGagUCGaUGGcGCGg -3' miRNA: 3'- aGCGCGCGA-----UGCCGC--AGUaAUUcUGC- -5' |
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33066 | 3' | -52.5 | NC_007497.1 | + | 18371 | 0.68 | 0.733753 |
Target: 5'- cUUGCGgauCGUUACGGCGUgaCAUUGcAGACc -3' miRNA: 3'- -AGCGC---GCGAUGCCGCA--GUAAU-UCUGc -5' |
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33066 | 3' | -52.5 | NC_007497.1 | + | 13808 | 0.68 | 0.733753 |
Target: 5'- cCGUGCGgcccCUGCGGCGUCcccugcGGCGu -3' miRNA: 3'- aGCGCGC----GAUGCCGCAGuaauu-CUGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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