miRNA display CGI


Results 1 - 20 of 36 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33066 3' -52.5 NC_007497.1 + 34864 0.73 0.407798
Target:  5'- cUCGCGCGCgaucacggccgcaUACGGCGUCcc---GGCGa -3'
miRNA:   3'- -AGCGCGCG-------------AUGCCGCAGuaauuCUGC- -5'
33066 3' -52.5 NC_007497.1 + 22869 0.66 0.816008
Target:  5'- gCGCGCGCUGCGaCGUaac-GAG-CGg -3'
miRNA:   3'- aGCGCGCGAUGCcGCAguaaUUCuGC- -5'
33066 3' -52.5 NC_007497.1 + 21329 0.67 0.786374
Target:  5'- cCGCGCGCcggACGGCucagcucgcuGUCGcu-AGACa -3'
miRNA:   3'- aGCGCGCGa--UGCCG----------CAGUaauUCUGc -5'
33066 3' -52.5 NC_007497.1 + 36970 0.67 0.786374
Target:  5'- uUCGCGCagugaucagcccGCcgGCGGCGcCG--GAGGCGg -3'
miRNA:   3'- -AGCGCG------------CGa-UGCCGCaGUaaUUCUGC- -5'
33066 3' -52.5 NC_007497.1 + 32760 0.67 0.776141
Target:  5'- -gGCGCGCccaGCGGCGUUcuc--GGCGg -3'
miRNA:   3'- agCGCGCGa--UGCCGCAGuaauuCUGC- -5'
33066 3' -52.5 NC_007497.1 + 18371 0.68 0.733753
Target:  5'- cUUGCGgauCGUUACGGCGUgaCAUUGcAGACc -3'
miRNA:   3'- -AGCGC---GCGAUGCCGCA--GUAAU-UCUGc -5'
33066 3' -52.5 NC_007497.1 + 42009 0.68 0.686282
Target:  5'- cUCGCGCGCcggcaacucgaucuUGuccccgguCGGCGUCGUguagucguAGACGa -3'
miRNA:   3'- -AGCGCGCG--------------AU--------GCCGCAGUAau------UCUGC- -5'
33066 3' -52.5 NC_007497.1 + 33841 0.69 0.63326
Target:  5'- cCGCGCGUUGCugGGCgGUCAUaccgauGACGu -3'
miRNA:   3'- aGCGCGCGAUG--CCG-CAGUAauu---CUGC- -5'
33066 3' -52.5 NC_007497.1 + 3214 0.68 0.700785
Target:  5'- -aGCGCGCUGgcCGGCGcCGUccgagcgcGAGACa -3'
miRNA:   3'- agCGCGCGAU--GCCGCaGUAa-------UUCUGc -5'
33066 3' -52.5 NC_007497.1 + 9097 0.68 0.700785
Target:  5'- gCGCGgGCUGCGGUG-CAggccggGGGAUc -3'
miRNA:   3'- aGCGCgCGAUGCCGCaGUaa----UUCUGc -5'
33066 3' -52.5 NC_007497.1 + 4269 0.68 0.678432
Target:  5'- uUCGUGCGC-AUGGCGcCGgaauuGGCGg -3'
miRNA:   3'- -AGCGCGCGaUGCCGCaGUaauu-CUGC- -5'
33066 3' -52.5 NC_007497.1 + 15325 0.69 0.655893
Target:  5'- cUCGCgGCGCUcggcCGGCGUCcgcGGGAUGc -3'
miRNA:   3'- -AGCG-CGCGAu---GCCGCAGuaaUUCUGC- -5'
33066 3' -52.5 NC_007497.1 + 33510 0.69 0.655893
Target:  5'- gUCGCGCGUauCGGCGUCAa------- -3'
miRNA:   3'- -AGCGCGCGauGCCGCAGUaauucugc -5'
33066 3' -52.5 NC_007497.1 + 21750 0.69 0.655893
Target:  5'- -aGCGaucaGCgGCGGCGUCGUcaauaGGGGCGa -3'
miRNA:   3'- agCGCg---CGaUGCCGCAGUAa----UUCUGC- -5'
33066 3' -52.5 NC_007497.1 + 36531 0.69 0.644583
Target:  5'- cUG-GCGCUGCGGC-UCGgcAGGACGc -3'
miRNA:   3'- aGCgCGCGAUGCCGcAGUaaUUCUGC- -5'
33066 3' -52.5 NC_007497.1 + 34329 0.7 0.615147
Target:  5'- aUCGCGCGCcucGCaGaGCGUCAUcguuccgacguucgGAGACGg -3'
miRNA:   3'- -AGCGCGCGa--UG-C-CGCAGUAa-------------UUCUGC- -5'
33066 3' -52.5 NC_007497.1 + 33402 0.74 0.389907
Target:  5'- aUCGCGCaGCUGC-GCGUCG---AGGCGg -3'
miRNA:   3'- -AGCGCG-CGAUGcCGCAGUaauUCUGC- -5'
33066 3' -52.5 NC_007497.1 + 27721 0.76 0.267578
Target:  5'- aUCGCGCGCUACugcgaugugauGGUGUCGgacggaaAAGGCGg -3'
miRNA:   3'- -AGCGCGCGAUG-----------CCGCAGUaa-----UUCUGC- -5'
33066 3' -52.5 NC_007497.1 + 14738 0.78 0.21606
Target:  5'- cUCGCGCGCggagcAUGGCGUCGgcgauccgaUAGGACGc -3'
miRNA:   3'- -AGCGCGCGa----UGCCGCAGUa--------AUUCUGC- -5'
33066 3' -52.5 NC_007497.1 + 30767 0.66 0.834761
Target:  5'- gUCGCgGCGUagucGCGGCGUUAauu-GGCGa -3'
miRNA:   3'- -AGCG-CGCGa---UGCCGCAGUaauuCUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.