miRNA display CGI


Results 1 - 20 of 23 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33066 5' -58.6 NC_007497.1 + 21106 0.66 0.49796
Target:  5'- -----aCGGuGUGCGgGUacUGCGGGCGCg -3'
miRNA:   3'- acgcaaGCC-CACGUgCA--GCGUCCGCG- -5'
33066 5' -58.6 NC_007497.1 + 2895 0.66 0.487758
Target:  5'- aUGCa--CGcGGUGCugG-CGCAuGGUGCg -3'
miRNA:   3'- -ACGcaaGC-CCACGugCaGCGU-CCGCG- -5'
33066 5' -58.6 NC_007497.1 + 43219 0.66 0.487758
Target:  5'- cGCGUaaGaGGUGgGCGgaacuggcUCGCauGGGCGCa -3'
miRNA:   3'- aCGCAagC-CCACgUGC--------AGCG--UCCGCG- -5'
33066 5' -58.6 NC_007497.1 + 35817 0.66 0.467658
Target:  5'- cGCGUcgagCGGcUGcCGCGUUGCuuGCGCg -3'
miRNA:   3'- aCGCAa---GCCcAC-GUGCAGCGucCGCG- -5'
33066 5' -58.6 NC_007497.1 + 36861 0.67 0.428794
Target:  5'- cGCGUUCuGGcucgauccgcUGCGCGaggCgGCGGGCGUc -3'
miRNA:   3'- aCGCAAGcCC----------ACGUGCa--G-CGUCCGCG- -5'
33066 5' -58.6 NC_007497.1 + 8693 0.67 0.425956
Target:  5'- aGCGggCGGG-GCGCGUCGgccgcccggucguguGGCuGCg -3'
miRNA:   3'- aCGCaaGCCCaCGUGCAGCgu-------------CCG-CG- -5'
33066 5' -58.6 NC_007497.1 + 38232 0.68 0.391901
Target:  5'- gGCGcUCaGGcGCGCcacgGUCGCcGGCGCg -3'
miRNA:   3'- aCGCaAGcCCaCGUG----CAGCGuCCGCG- -5'
33066 5' -58.6 NC_007497.1 + 33467 0.68 0.383005
Target:  5'- cGCGggCGGGcgGCGCccGUUccgagccggaaaGCAGGCGUc -3'
miRNA:   3'- aCGCaaGCCCa-CGUG--CAG------------CGUCCGCG- -5'
33066 5' -58.6 NC_007497.1 + 3772 0.68 0.374246
Target:  5'- uUGCGUcCGGcugGCG-GUaCGCAGGCGUg -3'
miRNA:   3'- -ACGCAaGCCca-CGUgCA-GCGUCCGCG- -5'
33066 5' -58.6 NC_007497.1 + 32878 0.68 0.374246
Target:  5'- cGCGaUUGGcGUGUugG-CGCgagccGGGCGCu -3'
miRNA:   3'- aCGCaAGCC-CACGugCaGCG-----UCCGCG- -5'
33066 5' -58.6 NC_007497.1 + 32640 0.68 0.365622
Target:  5'- aUGCGaUCGGacuugGCGCGUCugccGCAGGUGg -3'
miRNA:   3'- -ACGCaAGCCca---CGUGCAG----CGUCCGCg -5'
33066 5' -58.6 NC_007497.1 + 16855 0.68 0.357137
Target:  5'- gGCGcugaugCGGGcUGCuCGUcCGCcGGCGCg -3'
miRNA:   3'- aCGCaa----GCCC-ACGuGCA-GCGuCCGCG- -5'
33066 5' -58.6 NC_007497.1 + 31399 0.68 0.352113
Target:  5'- gGCGUgaaauacugGCACGUUGCAGaGCGCg -3'
miRNA:   3'- aCGCAagccca---CGUGCAGCGUC-CGCG- -5'
33066 5' -58.6 NC_007497.1 + 28343 0.68 0.348791
Target:  5'- aUGCGccUUGGGUGCG----GCAGGUGCa -3'
miRNA:   3'- -ACGCa-AGCCCACGUgcagCGUCCGCG- -5'
33066 5' -58.6 NC_007497.1 + 4261 0.69 0.33252
Target:  5'- cGCGaugagCGGcGUGUGCGUCGCcgaucagcacGGGCGg -3'
miRNA:   3'- aCGCaa---GCC-CACGUGCAGCG----------UCCGCg -5'
33066 5' -58.6 NC_007497.1 + 37085 0.69 0.329334
Target:  5'- aGCGUUCGGGUcagcgGCGCGccgaagcuuguucCGCcuccGGCGCc -3'
miRNA:   3'- aCGCAAGCCCA-----CGUGCa------------GCGu---CCGCG- -5'
33066 5' -58.6 NC_007497.1 + 16051 0.69 0.316813
Target:  5'- cGCugacaaCGGGUugauGCGCGaauggCGCGGGCGCg -3'
miRNA:   3'- aCGcaa---GCCCA----CGUGCa----GCGUCCGCG- -5'
33066 5' -58.6 NC_007497.1 + 22947 0.69 0.316813
Target:  5'- ---aUUCGGGUauGCcgcucguuACGUCGCAGcGCGCg -3'
miRNA:   3'- acgcAAGCCCA--CG--------UGCAGCGUC-CGCG- -5'
33066 5' -58.6 NC_007497.1 + 15309 0.7 0.266277
Target:  5'- gGCGUccgCGGGaUGCGCcacaggCGCGGGgGCu -3'
miRNA:   3'- aCGCAa--GCCC-ACGUGca----GCGUCCgCG- -5'
33066 5' -58.6 NC_007497.1 + 35623 0.72 0.216734
Target:  5'- cGCGgcaugggcCGGG-GCACGUCGgagcugaAGGCGCu -3'
miRNA:   3'- aCGCaa------GCCCaCGUGCAGCg------UCCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.