Results 41 - 60 of 91 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
33068 | 5' | -48.6 | NC_007497.1 | + | 32175 | 0.68 | 0.91111 |
Target: 5'- cAUCugCGAcg-CGUCGGCCGUuccGCc -3' miRNA: 3'- cUAGugGCUuuaGUAGCUGGCGuu-CG- -5' |
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33068 | 5' | -48.6 | NC_007497.1 | + | 23751 | 0.68 | 0.906957 |
Target: 5'- ---uGCCGAcGUUGUaugcgaagcucacggCGGCCGCGAGCu -3' miRNA: 3'- cuagUGGCUuUAGUA---------------GCUGGCGUUCG- -5' |
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33068 | 5' | -48.6 | NC_007497.1 | + | 38617 | 0.68 | 0.896839 |
Target: 5'- cGAUCugACCGAAuUCAUCGuCauCGAGCg -3' miRNA: 3'- -CUAG--UGGCUUuAGUAGCuGgcGUUCG- -5' |
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33068 | 5' | -48.6 | NC_007497.1 | + | 44048 | 0.68 | 0.896093 |
Target: 5'- cGAUCgcgGCCGGAAUCAUgcUGACgGCGgucauuuuguguuGGCg -3' miRNA: 3'- -CUAG---UGGCUUUAGUA--GCUGgCGU-------------UCG- -5' |
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33068 | 5' | -48.6 | NC_007497.1 | + | 28814 | 0.68 | 0.88925 |
Target: 5'- --cCGCCGAGcAUCAUCGAagcgcccaUCGCGaucAGCg -3' miRNA: 3'- cuaGUGGCUU-UAGUAGCU--------GGCGU---UCG- -5' |
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33068 | 5' | -48.6 | NC_007497.1 | + | 40934 | 0.68 | 0.88925 |
Target: 5'- cGAUgACCGAGG-CugcCGacGCCGCAAGCc -3' miRNA: 3'- -CUAgUGGCUUUaGua-GC--UGGCGUUCG- -5' |
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33068 | 5' | -48.6 | NC_007497.1 | + | 3328 | 0.68 | 0.881368 |
Target: 5'- uGAUCGCCGuc--CAUCGGCgUGC-GGCg -3' miRNA: 3'- -CUAGUGGCuuuaGUAGCUG-GCGuUCG- -5' |
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33068 | 5' | -48.6 | NC_007497.1 | + | 32090 | 0.68 | 0.881368 |
Target: 5'- uGGUCGCCGAc--CGUCGAgggguUCGguGGCg -3' miRNA: 3'- -CUAGUGGCUuuaGUAGCU-----GGCguUCG- -5' |
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33068 | 5' | -48.6 | NC_007497.1 | + | 19900 | 0.68 | 0.881368 |
Target: 5'- gGGUCAUCG-AGUCAggccaGACCGUcgugcGAGCa -3' miRNA: 3'- -CUAGUGGCuUUAGUag---CUGGCG-----UUCG- -5' |
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33068 | 5' | -48.6 | NC_007497.1 | + | 43281 | 0.69 | 0.873196 |
Target: 5'- uGAUCGCCGcuggUAUCGAUgGCGgcGGCc -3' miRNA: 3'- -CUAGUGGCuuuaGUAGCUGgCGU--UCG- -5' |
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33068 | 5' | -48.6 | NC_007497.1 | + | 38485 | 0.69 | 0.873196 |
Target: 5'- cGUCAuuuCCGGAGcgguacgaagcUCggCGAUCGCGAGCa -3' miRNA: 3'- cUAGU---GGCUUU-----------AGuaGCUGGCGUUCG- -5' |
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33068 | 5' | -48.6 | NC_007497.1 | + | 24686 | 0.69 | 0.873196 |
Target: 5'- uGAUUGCCGAu-UCAUCcaGACCGUuccuGCg -3' miRNA: 3'- -CUAGUGGCUuuAGUAG--CUGGCGuu--CG- -5' |
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33068 | 5' | -48.6 | NC_007497.1 | + | 20860 | 0.69 | 0.873196 |
Target: 5'- ---gAUCGA--UCAUCGuccgaACCGCGAGCa -3' miRNA: 3'- cuagUGGCUuuAGUAGC-----UGGCGUUCG- -5' |
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33068 | 5' | -48.6 | NC_007497.1 | + | 26171 | 0.69 | 0.873196 |
Target: 5'- --aCGCCGGGAcCGUCGGCCGgAuaccauGGCc -3' miRNA: 3'- cuaGUGGCUUUaGUAGCUGGCgU------UCG- -5' |
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33068 | 5' | -48.6 | NC_007497.1 | + | 20937 | 0.69 | 0.873196 |
Target: 5'- uGAUCGgCGAGAaacggaucUCGUCGACgGCGAa- -3' miRNA: 3'- -CUAGUgGCUUU--------AGUAGCUGgCGUUcg -5' |
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33068 | 5' | -48.6 | NC_007497.1 | + | 35717 | 0.69 | 0.873196 |
Target: 5'- --cCACCGccuugcuGAUCGucUCGACCaGCGGGCc -3' miRNA: 3'- cuaGUGGCu------UUAGU--AGCUGG-CGUUCG- -5' |
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33068 | 5' | -48.6 | NC_007497.1 | + | 37348 | 0.69 | 0.872364 |
Target: 5'- aGUCGuCCGAGAUCGaCGcaaccacGCuCGCGAGCg -3' miRNA: 3'- cUAGU-GGCUUUAGUaGC-------UG-GCGUUCG- -5' |
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33068 | 5' | -48.6 | NC_007497.1 | + | 27038 | 0.69 | 0.864744 |
Target: 5'- gGAUCGCCGugaagcGAUCAcccggCGccACUGCGGGCg -3' miRNA: 3'- -CUAGUGGCu-----UUAGUa----GC--UGGCGUUCG- -5' |
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33068 | 5' | -48.6 | NC_007497.1 | + | 25915 | 0.69 | 0.856019 |
Target: 5'- cGGUCGCCGAAuUCAUCugaGCUGCuacGGUc -3' miRNA: 3'- -CUAGUGGCUUuAGUAGc--UGGCGu--UCG- -5' |
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33068 | 5' | -48.6 | NC_007497.1 | + | 29456 | 0.69 | 0.84703 |
Target: 5'- --aCGCCGGuuuucucgaCGUCGGCCGCGacguGGCg -3' miRNA: 3'- cuaGUGGCUuua------GUAGCUGGCGU----UCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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