Results 1 - 20 of 31 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
33078 | 3' | -53.7 | NC_007497.1 | + | 3805 | 0.71 | 0.449205 |
Target: 5'- cCGGCGGCGCaucgaucccaUCGCUGAugUCGucAAa -3' miRNA: 3'- -GCCGCCGCG----------AGCGACUuuGGCuuUUc -5' |
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33078 | 3' | -53.7 | NC_007497.1 | + | 4175 | 0.67 | 0.700899 |
Target: 5'- -uGCGGUGCgcgaCGCgcGGGCCGGAAGGa -3' miRNA: 3'- gcCGCCGCGa---GCGacUUUGGCUUUUC- -5' |
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33078 | 3' | -53.7 | NC_007497.1 | + | 4624 | 0.71 | 0.469585 |
Target: 5'- -cGCGGCGCUCGUUGcauGGgCGAAGGu -3' miRNA: 3'- gcCGCCGCGAGCGACu--UUgGCUUUUc -5' |
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33078 | 3' | -53.7 | NC_007497.1 | + | 5126 | 0.79 | 0.139417 |
Target: 5'- gGGCgaaugGGCGCUCGCUGAgcAACCGAc--- -3' miRNA: 3'- gCCG-----CCGCGAGCGACU--UUGGCUuuuc -5' |
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33078 | 3' | -53.7 | NC_007497.1 | + | 6615 | 0.67 | 0.678644 |
Target: 5'- gCGGUGGCGC-CGaUGAAGuuGAAu-- -3' miRNA: 3'- -GCCGCCGCGaGCgACUUUggCUUuuc -5' |
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33078 | 3' | -53.7 | NC_007497.1 | + | 7360 | 0.67 | 0.678644 |
Target: 5'- gGGCGGCGaaCUUGCUGcGAguaucggcAUCGAGGGGa -3' miRNA: 3'- gCCGCCGC--GAGCGAC-UU--------UGGCUUUUC- -5' |
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33078 | 3' | -53.7 | NC_007497.1 | + | 7959 | 0.66 | 0.755093 |
Target: 5'- uGGCGGUGagugcagcagacCUCGCcGAGugccgGCUGAGAAGc -3' miRNA: 3'- gCCGCCGC------------GAGCGaCUU-----UGGCUUUUC- -5' |
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33078 | 3' | -53.7 | NC_007497.1 | + | 16479 | 0.66 | 0.733724 |
Target: 5'- gCGGCGGCcuGCUCGaaGGuauCCGGAu-- -3' miRNA: 3'- -GCCGCCG--CGAGCgaCUuu-GGCUUuuc -5' |
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33078 | 3' | -53.7 | NC_007497.1 | + | 21450 | 0.66 | 0.754036 |
Target: 5'- aCGGC-GCGCUCGagaaCUGGAAacgcaacUCGAAGAGc -3' miRNA: 3'- -GCCGcCGCGAGC----GACUUU-------GGCUUUUC- -5' |
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33078 | 3' | -53.7 | NC_007497.1 | + | 24261 | 0.67 | 0.711927 |
Target: 5'- -cGUGGCGUcgUCGCUGAcGCUGAc--- -3' miRNA: 3'- gcCGCCGCG--AGCGACUuUGGCUuuuc -5' |
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33078 | 3' | -53.7 | NC_007497.1 | + | 25767 | 0.67 | 0.688688 |
Target: 5'- uCGGacgGGCGCacguacaUCGCUGGAAUCGGu--- -3' miRNA: 3'- -GCCg--CCGCG-------AGCGACUUUGGCUuuuc -5' |
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33078 | 3' | -53.7 | NC_007497.1 | + | 26053 | 0.66 | 0.733724 |
Target: 5'- cCGGCGuGUGgUCGCUGcAGucggcgauuGCCGAGGGc -3' miRNA: 3'- -GCCGC-CGCgAGCGAC-UU---------UGGCUUUUc -5' |
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33078 | 3' | -53.7 | NC_007497.1 | + | 28616 | 0.67 | 0.700899 |
Target: 5'- gCGGCGGCgGCggCGgUGGAgagucGCCGGAcAGc -3' miRNA: 3'- -GCCGCCG-CGa-GCgACUU-----UGGCUUuUC- -5' |
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33078 | 3' | -53.7 | NC_007497.1 | + | 29568 | 0.68 | 0.644943 |
Target: 5'- -aGCGGCGCgacauaucCGCUGGGuCCGAAu-- -3' miRNA: 3'- gcCGCCGCGa-------GCGACUUuGGCUUuuc -5' |
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33078 | 3' | -53.7 | NC_007497.1 | + | 30061 | 0.68 | 0.607753 |
Target: 5'- aCGGCGGCuuuuugugcgacacGCUCGCau-AGCCGAc--- -3' miRNA: 3'- -GCCGCCG--------------CGAGCGacuUUGGCUuuuc -5' |
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33078 | 3' | -53.7 | NC_007497.1 | + | 32327 | 0.67 | 0.689801 |
Target: 5'- uGGCGGCaGCggUGCUGguGCUGGcgGGc -3' miRNA: 3'- gCCGCCG-CGa-GCGACuuUGGCUuuUC- -5' |
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33078 | 3' | -53.7 | NC_007497.1 | + | 32864 | 0.7 | 0.533325 |
Target: 5'- uGGCgcgagccgGGCGCUCGCUcuguaucagGAGuccGCCGAGAAc -3' miRNA: 3'- gCCG--------CCGCGAGCGA---------CUU---UGGCUUUUc -5' |
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33078 | 3' | -53.7 | NC_007497.1 | + | 33381 | 0.7 | 0.51169 |
Target: 5'- gCGGUGGCGaccgacaaGCUGAcgcaguCCGAGAAGg -3' miRNA: 3'- -GCCGCCGCgag-----CGACUuu----GGCUUUUC- -5' |
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33078 | 3' | -53.7 | NC_007497.1 | + | 33460 | 0.77 | 0.200402 |
Target: 5'- gGGCGGCGCcCGUUccGAGCCGGAAAGc -3' miRNA: 3'- gCCGCCGCGaGCGAc-UUUGGCUUUUC- -5' |
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33078 | 3' | -53.7 | NC_007497.1 | + | 34790 | 1.1 | 0.000984 |
Target: 5'- gCGGCGGCGCUCGCUGAAACCGAAAAGg -3' miRNA: 3'- -GCCGCCGCGAGCGACUUUGGCUUUUC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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