miRNA display CGI


Results 1 - 20 of 31 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33078 3' -53.7 NC_007497.1 + 3805 0.71 0.449205
Target:  5'- cCGGCGGCGCaucgaucccaUCGCUGAugUCGucAAa -3'
miRNA:   3'- -GCCGCCGCG----------AGCGACUuuGGCuuUUc -5'
33078 3' -53.7 NC_007497.1 + 37017 0.66 0.755093
Target:  5'- uCGGC-GCGC-CGCUGAc-CCGAAc-- -3'
miRNA:   3'- -GCCGcCGCGaGCGACUuuGGCUUuuc -5'
33078 3' -53.7 NC_007497.1 + 21450 0.66 0.754036
Target:  5'- aCGGC-GCGCUCGagaaCUGGAAacgcaacUCGAAGAGc -3'
miRNA:   3'- -GCCGcCGCGAGC----GACUUU-------GGCUUUUC- -5'
33078 3' -53.7 NC_007497.1 + 16479 0.66 0.733724
Target:  5'- gCGGCGGCcuGCUCGaaGGuauCCGGAu-- -3'
miRNA:   3'- -GCCGCCG--CGAGCgaCUuu-GGCUUuuc -5'
33078 3' -53.7 NC_007497.1 + 29568 0.68 0.644943
Target:  5'- -aGCGGCGCgacauaucCGCUGGGuCCGAAu-- -3'
miRNA:   3'- gcCGCCGCGa-------GCGACUUuGGCUUuuc -5'
33078 3' -53.7 NC_007497.1 + 44319 0.69 0.577485
Target:  5'- gCGGCGGUGC-CGCcgGAgcaAACCGGc--- -3'
miRNA:   3'- -GCCGCCGCGaGCGa-CU---UUGGCUuuuc -5'
33078 3' -53.7 NC_007497.1 + 44547 0.71 0.459335
Target:  5'- gGGCuGGCGCcggcUGCUGAGACUGAu--- -3'
miRNA:   3'- gCCG-CCGCGa---GCGACUUUGGCUuuuc -5'
33078 3' -53.7 NC_007497.1 + 41918 0.68 0.63367
Target:  5'- gGGCGGCGCcaUCGa-GGuuCCGAAGGa -3'
miRNA:   3'- gCCGCCGCG--AGCgaCUuuGGCUUUUc -5'
33078 3' -53.7 NC_007497.1 + 37983 0.68 0.611129
Target:  5'- gCGGcCGGCGUucgacgcgucgaUCGCUcAGGCCGAGGGc -3'
miRNA:   3'- -GCC-GCCGCG------------AGCGAcUUUGGCUUUUc -5'
33078 3' -53.7 NC_007497.1 + 30061 0.68 0.607753
Target:  5'- aCGGCGGCuuuuugugcgacacGCUCGCau-AGCCGAc--- -3'
miRNA:   3'- -GCCGCCG--------------CGAGCGacuUUGGCUuuuc -5'
33078 3' -53.7 NC_007497.1 + 32864 0.7 0.533325
Target:  5'- uGGCgcgagccgGGCGCUCGCUcuguaucagGAGuccGCCGAGAAc -3'
miRNA:   3'- gCCG--------CCGCGAGCGA---------CUU---UGGCUUUUc -5'
33078 3' -53.7 NC_007497.1 + 42402 0.7 0.522465
Target:  5'- uGGCGGUGCUgCGCUGcguGACCc----- -3'
miRNA:   3'- gCCGCCGCGA-GCGACu--UUGGcuuuuc -5'
33078 3' -53.7 NC_007497.1 + 33381 0.7 0.51169
Target:  5'- gCGGUGGCGaccgacaaGCUGAcgcaguCCGAGAAGg -3'
miRNA:   3'- -GCCGCCGCgag-----CGACUuu----GGCUUUUC- -5'
33078 3' -53.7 NC_007497.1 + 4624 0.71 0.469585
Target:  5'- -cGCGGCGCUCGUUGcauGGgCGAAGGu -3'
miRNA:   3'- gcCGCCGCGAGCGACu--UUgGCUUUUc -5'
33078 3' -53.7 NC_007497.1 + 39277 0.74 0.290715
Target:  5'- uCGGCGGCgGCcUGCUGAAuCCGGAGc- -3'
miRNA:   3'- -GCCGCCG-CGaGCGACUUuGGCUUUuc -5'
33078 3' -53.7 NC_007497.1 + 33460 0.77 0.200402
Target:  5'- gGGCGGCGCcCGUUccGAGCCGGAAAGc -3'
miRNA:   3'- gCCGCCGCGaGCGAc-UUUGGCUUUUC- -5'
33078 3' -53.7 NC_007497.1 + 38185 0.77 0.194986
Target:  5'- aGGCGcGCGCUCGCgc--ACCGAAAAa -3'
miRNA:   3'- gCCGC-CGCGAGCGacuuUGGCUUUUc -5'
33078 3' -53.7 NC_007497.1 + 5126 0.79 0.139417
Target:  5'- gGGCgaaugGGCGCUCGCUGAgcAACCGAc--- -3'
miRNA:   3'- gCCG-----CCGCGAGCGACU--UUGGCUuuuc -5'
33078 3' -53.7 NC_007497.1 + 36610 0.8 0.124378
Target:  5'- uCGGCGGC-CUCGCcGcAGACCGGGAGGa -3'
miRNA:   3'- -GCCGCCGcGAGCGaC-UUUGGCUUUUC- -5'
33078 3' -53.7 NC_007497.1 + 7959 0.66 0.755093
Target:  5'- uGGCGGUGagugcagcagacCUCGCcGAGugccgGCUGAGAAGc -3'
miRNA:   3'- gCCGCCGC------------GAGCGaCUU-----UGGCUUUUC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.