miRNA display CGI


Results 1 - 20 of 50 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33078 5' -57.3 NC_007497.1 + 34756 1.1 0.000456
Target:  5'- cGGCCGCCGAGCGCGAAGUAGCGAUCGc -3'
miRNA:   3'- -CCGGCGGCUCGCGCUUCAUCGCUAGC- -5'
33078 5' -57.3 NC_007497.1 + 28388 0.78 0.096417
Target:  5'- cGGCgGUCGAGCGCGAAacuGCGGUUGg -3'
miRNA:   3'- -CCGgCGGCUCGCGCUUcauCGCUAGC- -5'
33078 5' -57.3 NC_007497.1 + 23233 0.77 0.114106
Target:  5'- cGGCUGCCGGGCuuccgGCgGAAGUGGCGGgauggCGg -3'
miRNA:   3'- -CCGGCGGCUCG-----CG-CUUCAUCGCUa----GC- -5'
33078 5' -57.3 NC_007497.1 + 4245 0.75 0.17703
Target:  5'- uGGCCGCCGAGCaucacGCGAug-AGCGG-CGu -3'
miRNA:   3'- -CCGGCGGCUCG-----CGCUucaUCGCUaGC- -5'
33078 5' -57.3 NC_007497.1 + 3179 0.73 0.20771
Target:  5'- aGCCGCuCGAGuCGgGAAGUGGgGAUuCGa -3'
miRNA:   3'- cCGGCG-GCUC-GCgCUUCAUCgCUA-GC- -5'
33078 5' -57.3 NC_007497.1 + 2607 0.73 0.23669
Target:  5'- cGGCCGCCGGcGCGCacgcccgggcaGAAGUGGCa---- -3'
miRNA:   3'- -CCGGCGGCU-CGCG-----------CUUCAUCGcuagc -5'
33078 5' -57.3 NC_007497.1 + 32819 0.73 0.23669
Target:  5'- cGCCGCUGGGCGCgccGAGGaAGCGuUCa -3'
miRNA:   3'- cCGGCGGCUCGCG---CUUCaUCGCuAGc -5'
33078 5' -57.3 NC_007497.1 + 29782 0.72 0.26225
Target:  5'- cGGgCG-CGAGCGCGAAcUGGuCGGUCGg -3'
miRNA:   3'- -CCgGCgGCUCGCGCUUcAUC-GCUAGC- -5'
33078 5' -57.3 NC_007497.1 + 23576 0.72 0.26225
Target:  5'- cGCUGCUGGGCGCGgcGgcgGGCGccggcGUCGu -3'
miRNA:   3'- cCGGCGGCUCGCGCuuCa--UCGC-----UAGC- -5'
33078 5' -57.3 NC_007497.1 + 38215 0.72 0.268981
Target:  5'- cGGUCGCCG-GCGCGAAc--GUGAUCc -3'
miRNA:   3'- -CCGGCGGCuCGCGCUUcauCGCUAGc -5'
33078 5' -57.3 NC_007497.1 + 11689 0.72 0.275158
Target:  5'- cGGCCgggaguaGCCGGGCGCGcGAGUgaAGC-AUCGa -3'
miRNA:   3'- -CCGG-------CGGCUCGCGC-UUCA--UCGcUAGC- -5'
33078 5' -57.3 NC_007497.1 + 11738 0.71 0.282861
Target:  5'- cGGCCguGCCGGuuccgggccGCGCGAGGUuGCGA-CGa -3'
miRNA:   3'- -CCGG--CGGCU---------CGCGCUUCAuCGCUaGC- -5'
33078 5' -57.3 NC_007497.1 + 34587 0.71 0.288569
Target:  5'- cGGCCGCCGuuuGCGCGAccgcggcacgcuccGUugcugcggccaagccGGCGGUCGc -3'
miRNA:   3'- -CCGGCGGCu--CGCGCUu-------------CA---------------UCGCUAGC- -5'
33078 5' -57.3 NC_007497.1 + 32090 0.71 0.289289
Target:  5'- uGGUCGCCGAcCGuCGAgggguucGGUGGCGAUaCGa -3'
miRNA:   3'- -CCGGCGGCUcGC-GCU-------UCAUCGCUA-GC- -5'
33078 5' -57.3 NC_007497.1 + 5874 0.71 0.297301
Target:  5'- aGCUGCCGGGCggacucGCGGAGUgguuGGCGAggCGu -3'
miRNA:   3'- cCGGCGGCUCG------CGCUUCA----UCGCUa-GC- -5'
33078 5' -57.3 NC_007497.1 + 15542 0.71 0.297301
Target:  5'- uGGCCuuuCUGAagaucuggaucgGCGCGGcAGUGGCGAUCGc -3'
miRNA:   3'- -CCGGc--GGCU------------CGCGCU-UCAUCGCUAGC- -5'
33078 5' -57.3 NC_007497.1 + 28121 0.71 0.304733
Target:  5'- aGCUGCCGAGUGCGAaauccggcuGGcUGGUGcgCGu -3'
miRNA:   3'- cCGGCGGCUCGCGCU---------UC-AUCGCuaGC- -5'
33078 5' -57.3 NC_007497.1 + 27118 0.71 0.315377
Target:  5'- cGGCCGCCGAuGCGCcgccccgccuugcgcGGAucggcaaUAGCGAUCa -3'
miRNA:   3'- -CCGGCGGCU-CGCG---------------CUUc------AUCGCUAGc -5'
33078 5' -57.3 NC_007497.1 + 33967 0.7 0.335881
Target:  5'- uGGCCGCCGaAGCGUGGaacaAGUA-CG-UCGa -3'
miRNA:   3'- -CCGGCGGC-UCGCGCU----UCAUcGCuAGC- -5'
33078 5' -57.3 NC_007497.1 + 212 0.7 0.352305
Target:  5'- cGCCGCgGuGCGCGAcgauGUGAUCGc -3'
miRNA:   3'- cCGGCGgCuCGCGCUucauCGCUAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.