miRNA display CGI


Results 1 - 20 of 50 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33078 5' -57.3 NC_007497.1 + 23233 0.77 0.114106
Target:  5'- cGGCUGCCGGGCuuccgGCgGAAGUGGCGGgauggCGg -3'
miRNA:   3'- -CCGGCGGCUCG-----CG-CUUCAUCGCUa----GC- -5'
33078 5' -57.3 NC_007497.1 + 12015 0.68 0.442606
Target:  5'- uGCCG-CGAGCgGCGAaaccGGUAccGUGAUCGg -3'
miRNA:   3'- cCGGCgGCUCG-CGCU----UCAU--CGCUAGC- -5'
33078 5' -57.3 NC_007497.1 + 26776 0.68 0.452338
Target:  5'- cGGCCGCUGcugaaucuGCGCGccGUcGuCGAUCGc -3'
miRNA:   3'- -CCGGCGGCu-------CGCGCuuCAuC-GCUAGC- -5'
33078 5' -57.3 NC_007497.1 + 34738 0.68 0.462186
Target:  5'- cGCCGCCGcguAGCGCGucugauCGAUCGu -3'
miRNA:   3'- cCGGCGGC---UCGCGCuucaucGCUAGC- -5'
33078 5' -57.3 NC_007497.1 + 37766 0.67 0.482212
Target:  5'- gGGCCGCCGAacucGCGaCGGAcacGUAGCcuUUGg -3'
miRNA:   3'- -CCGGCGGCU----CGC-GCUU---CAUCGcuAGC- -5'
33078 5' -57.3 NC_007497.1 + 22303 0.67 0.513007
Target:  5'- uGCgGCCGAGUuCGGAGUuuGGCaGUCGc -3'
miRNA:   3'- cCGgCGGCUCGcGCUUCA--UCGcUAGC- -5'
33078 5' -57.3 NC_007497.1 + 12729 0.66 0.552041
Target:  5'- cGGCCggcucuacgguguaGCCGAGaaaCGggGUAGCGccCGa -3'
miRNA:   3'- -CCGG--------------CGGCUCgc-GCuuCAUCGCuaGC- -5'
33078 5' -57.3 NC_007497.1 + 44652 0.66 0.555248
Target:  5'- cGGCCGCCGAugcuGuCGCGggGcUGuagccugccGCGAUgGc -3'
miRNA:   3'- -CCGGCGGCU----C-GCGCuuC-AU---------CGCUAgC- -5'
33078 5' -57.3 NC_007497.1 + 15463 0.66 0.565977
Target:  5'- cGCUGUCGcauucGCGUacGGAGUcGCGAUCGg -3'
miRNA:   3'- cCGGCGGCu----CGCG--CUUCAuCGCUAGC- -5'
33078 5' -57.3 NC_007497.1 + 26043 0.68 0.432993
Target:  5'- cGUCGCCG-GCcauCGGAGgcGUGAUCGa -3'
miRNA:   3'- cCGGCGGCuCGc--GCUUCauCGCUAGC- -5'
33078 5' -57.3 NC_007497.1 + 36557 0.69 0.414139
Target:  5'- aGGCCGCCGAGCuCGAucgccuucGUGaccaccCGAUCGu -3'
miRNA:   3'- -CCGGCGGCUCGcGCUu-------CAUc-----GCUAGC- -5'
33078 5' -57.3 NC_007497.1 + 4245 0.75 0.17703
Target:  5'- uGGCCGCCGAGCaucacGCGAug-AGCGG-CGu -3'
miRNA:   3'- -CCGGCGGCUCG-----CGCUucaUCGCUaGC- -5'
33078 5' -57.3 NC_007497.1 + 29782 0.72 0.26225
Target:  5'- cGGgCG-CGAGCGCGAAcUGGuCGGUCGg -3'
miRNA:   3'- -CCgGCgGCUCGCGCUUcAUC-GCUAGC- -5'
33078 5' -57.3 NC_007497.1 + 11689 0.72 0.275158
Target:  5'- cGGCCgggaguaGCCGGGCGCGcGAGUgaAGC-AUCGa -3'
miRNA:   3'- -CCGG-------CGGCUCGCGC-UUCA--UCGcUAGC- -5'
33078 5' -57.3 NC_007497.1 + 34587 0.71 0.288569
Target:  5'- cGGCCGCCGuuuGCGCGAccgcggcacgcuccGUugcugcggccaagccGGCGGUCGc -3'
miRNA:   3'- -CCGGCGGCu--CGCGCUu-------------CA---------------UCGCUAGC- -5'
33078 5' -57.3 NC_007497.1 + 15542 0.71 0.297301
Target:  5'- uGGCCuuuCUGAagaucuggaucgGCGCGGcAGUGGCGAUCGc -3'
miRNA:   3'- -CCGGc--GGCU------------CGCGCU-UCAUCGCUAGC- -5'
33078 5' -57.3 NC_007497.1 + 27118 0.71 0.315377
Target:  5'- cGGCCGCCGAuGCGCcgccccgccuugcgcGGAucggcaaUAGCGAUCa -3'
miRNA:   3'- -CCGGCGGCU-CGCG---------------CUUc------AUCGCUAGc -5'
33078 5' -57.3 NC_007497.1 + 212 0.7 0.352305
Target:  5'- cGCCGCgGuGCGCGAcgauGUGAUCGc -3'
miRNA:   3'- cCGGCGgCuCGCGCUucauCGCUAGC- -5'
33078 5' -57.3 NC_007497.1 + 15262 0.7 0.360727
Target:  5'- cGCCgGCCGAGCGCcgcGAGgcGCGcAUCc -3'
miRNA:   3'- cCGG-CGGCUCGCGc--UUCauCGC-UAGc -5'
33078 5' -57.3 NC_007497.1 + 26653 0.66 0.587584
Target:  5'- gGGUCGCUGuuGCGCaGAcg-GGCGGUCu -3'
miRNA:   3'- -CCGGCGGCu-CGCG-CUucaUCGCUAGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.