miRNA display CGI


Results 1 - 19 of 19 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33096 5' -62.2 NC_007497.1 + 1920 0.66 0.326796
Target:  5'- ---aGUUCCGaGauGCACCGgCCGCuGGUa -3'
miRNA:   3'- caaaCGAGGC-CgcCGUGGC-GGCG-CCA- -5'
33096 5' -62.2 NC_007497.1 + 41170 0.66 0.31909
Target:  5'- ---gGCaCCGGCGuCACCGCgaaGCGGa -3'
miRNA:   3'- caaaCGaGGCCGCcGUGGCGg--CGCCa -5'
33096 5' -62.2 NC_007497.1 + 23495 0.66 0.304091
Target:  5'- --gUGCacgacgCCGGCGccCGCCGCCGCGc- -3'
miRNA:   3'- caaACGa-----GGCCGCc-GUGGCGGCGCca -5'
33096 5' -62.2 NC_007497.1 + 36613 0.66 0.296796
Target:  5'- ---aGCU-CGGCGGCcUCGCCGCa-- -3'
miRNA:   3'- caaaCGAgGCCGCCGuGGCGGCGcca -5'
33096 5' -62.2 NC_007497.1 + 25167 0.66 0.292485
Target:  5'- --cUGCUCCGGCauaaaugcccagaacGGCucACCGCCcgacauaucgGCGGc -3'
miRNA:   3'- caaACGAGGCCG---------------CCG--UGGCGG----------CGCCa -5'
33096 5' -62.2 NC_007497.1 + 42901 0.66 0.289638
Target:  5'- -cUUGUcuUCCGGaaccGCGCUGCCGCGaGUg -3'
miRNA:   3'- caAACG--AGGCCgc--CGUGGCGGCGC-CA- -5'
33096 5' -62.2 NC_007497.1 + 27519 0.67 0.282617
Target:  5'- ---aGCUcCCGGCccccaguaGGCGauGCCGCGGa -3'
miRNA:   3'- caaaCGA-GGCCG--------CCGUggCGGCGCCa -5'
33096 5' -62.2 NC_007497.1 + 34726 0.67 0.255878
Target:  5'- ---gGUUUCaGCGaGCGCCGCCGCGu- -3'
miRNA:   3'- caaaCGAGGcCGC-CGUGGCGGCGCca -5'
33096 5' -62.2 NC_007497.1 + 40519 0.67 0.255878
Target:  5'- ---gGCguuUCCGGCGGUAgCGCC-CGGc -3'
miRNA:   3'- caaaCG---AGGCCGCCGUgGCGGcGCCa -5'
33096 5' -62.2 NC_007497.1 + 2293 0.68 0.243304
Target:  5'- ---gGCUCgaaguaccUGGCGGC-CUGCCGUGGc -3'
miRNA:   3'- caaaCGAG--------GCCGCCGuGGCGGCGCCa -5'
33096 5' -62.2 NC_007497.1 + 27175 0.68 0.239634
Target:  5'- ---cGCaUCGGCGGCcguauccgcuccgcuGCCGgCGCGGUu -3'
miRNA:   3'- caaaCGaGGCCGCCG---------------UGGCgGCGCCA- -5'
33096 5' -62.2 NC_007497.1 + 39622 0.68 0.237212
Target:  5'- cGggUGCUUcgCGGCauuGGCACCGCCcGCGa- -3'
miRNA:   3'- -CaaACGAG--GCCG---CCGUGGCGG-CGCca -5'
33096 5' -62.2 NC_007497.1 + 32487 0.69 0.192971
Target:  5'- -gUUGCcgCCGGCGGCG--GCCGCGa- -3'
miRNA:   3'- caAACGa-GGCCGCCGUggCGGCGCca -5'
33096 5' -62.2 NC_007497.1 + 36984 0.7 0.164694
Target:  5'- ---aGCccgCCGGCGGCGCCGgagGCGGa -3'
miRNA:   3'- caaaCGa--GGCCGCCGUGGCgg-CGCCa -5'
33096 5' -62.2 NC_007497.1 + 2028 0.73 0.092899
Target:  5'- --cUGCUUCGGC-GUACCGgCGCGGUu -3'
miRNA:   3'- caaACGAGGCCGcCGUGGCgGCGCCA- -5'
33096 5' -62.2 NC_007497.1 + 34619 0.73 0.090352
Target:  5'- -gUUGCUgcggccaagCCGGCGGU--CGCCGCGGUg -3'
miRNA:   3'- caAACGA---------GGCCGCCGugGCGGCGCCA- -5'
33096 5' -62.2 NC_007497.1 + 37058 0.76 0.062745
Target:  5'- -cUUGUUCCGccucCGGCGCCGCCgGCGGg -3'
miRNA:   3'- caAACGAGGCc---GCCGUGGCGG-CGCCa -5'
33096 5' -62.2 NC_007497.1 + 33911 0.8 0.030758
Target:  5'- ---cGCUUCGGCGGCcauGCCGCCGCGa- -3'
miRNA:   3'- caaaCGAGGCCGCCG---UGGCGGCGCca -5'
33096 5' -62.2 NC_007497.1 + 44386 1.06 0.000276
Target:  5'- gGUUUGCUCCGGCGGCACCGCCGCGGUu -3'
miRNA:   3'- -CAAACGAGGCCGCCGUGGCGGCGCCA- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.