miRNA display CGI


Results 1 - 20 of 37 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33098 3' -53.2 NC_007497.1 + 523 1.11 0.000925
Target:  5'- gGCGACGAUCUGCGUAAUGCAGCCGCAu -3'
miRNA:   3'- -CGCUGCUAGACGCAUUACGUCGGCGU- -5'
33098 3' -53.2 NC_007497.1 + 853 0.66 0.762754
Target:  5'- cGCGGCGuUCUGCuUGcugaccguguucacGUGCGcGUCGCAa -3'
miRNA:   3'- -CGCUGCuAGACGcAU--------------UACGU-CGGCGU- -5'
33098 3' -53.2 NC_007497.1 + 8451 0.66 0.744619
Target:  5'- aGCGAUGGUC-GCGUcg-GCAGUuuuccaggCGCAg -3'
miRNA:   3'- -CGCUGCUAGaCGCAuuaCGUCG--------GCGU- -5'
33098 3' -53.2 NC_007497.1 + 8745 0.7 0.531678
Target:  5'- uGCGGC-AUUUGCGUcgAAUGCGGCgaGCGu -3'
miRNA:   3'- -CGCUGcUAGACGCA--UUACGUCGg-CGU- -5'
33098 3' -53.2 NC_007497.1 + 9307 0.67 0.678218
Target:  5'- uCGACGcgCUGCGgAAUGCcGgCGCu -3'
miRNA:   3'- cGCUGCuaGACGCaUUACGuCgGCGu -5'
33098 3' -53.2 NC_007497.1 + 9661 0.71 0.436922
Target:  5'- cGCGgaGCGAUC-GCG--AUGCGGCUGCGg -3'
miRNA:   3'- -CGC--UGCUAGaCGCauUACGUCGGCGU- -5'
33098 3' -53.2 NC_007497.1 + 9829 0.67 0.678218
Target:  5'- cGCGAgCGAUUgaaGCa-AGUGCGGUCGCAc -3'
miRNA:   3'- -CGCU-GCUAGa--CGcaUUACGUCGGCGU- -5'
33098 3' -53.2 NC_007497.1 + 9929 0.67 0.70067
Target:  5'- uGCGGCcguGAUCgcGCGcGAgaccGCGGCCGCGc -3'
miRNA:   3'- -CGCUG---CUAGa-CGCaUUa---CGUCGGCGU- -5'
33098 3' -53.2 NC_007497.1 + 10008 0.69 0.587459
Target:  5'- aGCGACGcGUC-GCGUuggagGCcGCCGCGg -3'
miRNA:   3'- -CGCUGC-UAGaCGCAuua--CGuCGGCGU- -5'
33098 3' -53.2 NC_007497.1 + 10197 0.66 0.744619
Target:  5'- aGCGugccGCGGUC-GCGcaaAcgGCGGCCGCc -3'
miRNA:   3'- -CGC----UGCUAGaCGCa--UuaCGUCGGCGu -5'
33098 3' -53.2 NC_007497.1 + 13475 0.72 0.407533
Target:  5'- -gGACGcuucgCUGCGUAucagGUGCAGaCCGCGa -3'
miRNA:   3'- cgCUGCua---GACGCAU----UACGUC-GGCGU- -5'
33098 3' -53.2 NC_007497.1 + 14222 0.67 0.70067
Target:  5'- gGCGGCGAUgugCUGCGUuuucauggGCAcCUGCAg -3'
miRNA:   3'- -CGCUGCUA---GACGCAuua-----CGUcGGCGU- -5'
33098 3' -53.2 NC_007497.1 + 14713 0.69 0.576187
Target:  5'- gGUGAgCGAUcCUGCGUuggaucgcUGCAGCCaGCGg -3'
miRNA:   3'- -CGCU-GCUA-GACGCAuu------ACGUCGG-CGU- -5'
33098 3' -53.2 NC_007497.1 + 18627 0.72 0.417192
Target:  5'- cCGACGGUCccgGCGUGcagggGCAGCCGa- -3'
miRNA:   3'- cGCUGCUAGa--CGCAUua---CGUCGGCgu -5'
33098 3' -53.2 NC_007497.1 + 21032 0.7 0.499127
Target:  5'- aGCaGACGAUgaGCG-AGcGCGGCCGCc -3'
miRNA:   3'- -CG-CUGCUAgaCGCaUUaCGUCGGCGu -5'
33098 3' -53.2 NC_007497.1 + 21580 0.68 0.655579
Target:  5'- gGCGAcgcccuCGAUCUGCuUGccgacGUGCucGGCCGCGu -3'
miRNA:   3'- -CGCU------GCUAGACGcAU-----UACG--UCGGCGU- -5'
33098 3' -53.2 NC_007497.1 + 23232 0.66 0.765914
Target:  5'- uCGACGAgCUGCGcccacGCcucuGCCGCAg -3'
miRNA:   3'- cGCUGCUaGACGCauua-CGu---CGGCGU- -5'
33098 3' -53.2 NC_007497.1 + 23255 0.67 0.722837
Target:  5'- aGUGGCGGgaugGCGg---GCGGCUGCGa -3'
miRNA:   3'- -CGCUGCUaga-CGCauuaCGUCGGCGU- -5'
33098 3' -53.2 NC_007497.1 + 25787 0.87 0.043167
Target:  5'- cGCGACGGUCUGC--AcgGCGGCCGCAu -3'
miRNA:   3'- -CGCUGCUAGACGcaUuaCGUCGGCGU- -5'
33098 3' -53.2 NC_007497.1 + 27585 0.75 0.280509
Target:  5'- cGCgGGCGG-CUGCGgg--GCGGCCGCGa -3'
miRNA:   3'- -CG-CUGCUaGACGCauuaCGUCGGCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.