miRNA display CGI


Results 1 - 20 of 37 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33098 3' -53.2 NC_007497.1 + 523 1.11 0.000925
Target:  5'- gGCGACGAUCUGCGUAAUGCAGCCGCAu -3'
miRNA:   3'- -CGCUGCUAGACGCAUUACGUCGGCGU- -5'
33098 3' -53.2 NC_007497.1 + 853 0.66 0.762754
Target:  5'- cGCGGCGuUCUGCuUGcugaccguguucacGUGCGcGUCGCAa -3'
miRNA:   3'- -CGCUGCuAGACGcAU--------------UACGU-CGGCGU- -5'
33098 3' -53.2 NC_007497.1 + 34563 0.66 0.744619
Target:  5'- uGCGcaugaGCGAgcCUGCGcgg-GCGGCCGCc -3'
miRNA:   3'- -CGC-----UGCUa-GACGCauuaCGUCGGCGu -5'
33098 3' -53.2 NC_007497.1 + 35403 0.66 0.733782
Target:  5'- cGCGACGAUCU-CGgucUGCAGgCGa- -3'
miRNA:   3'- -CGCUGCUAGAcGCauuACGUCgGCgu -5'
33098 3' -53.2 NC_007497.1 + 28243 0.66 0.732692
Target:  5'- aGCGAauacggacugccgUGAgCUGCGUGuucUGCAccuGCCGCAc -3'
miRNA:   3'- -CGCU-------------GCUaGACGCAUu--ACGU---CGGCGU- -5'
33098 3' -53.2 NC_007497.1 + 23255 0.67 0.722837
Target:  5'- aGUGGCGGgaugGCGg---GCGGCUGCGa -3'
miRNA:   3'- -CGCUGCUaga-CGCauuaCGUCGGCGU- -5'
33098 3' -53.2 NC_007497.1 + 39772 0.67 0.689474
Target:  5'- cGCGucguCGAggaucugCUGCGUA--GCAGCCGgGu -3'
miRNA:   3'- -CGCu---GCUa------GACGCAUuaCGUCGGCgU- -5'
33098 3' -53.2 NC_007497.1 + 38058 0.67 0.678218
Target:  5'- cCGGCGAauccuUCUGCuUGAgcGCGGCCGUg -3'
miRNA:   3'- cGCUGCU-----AGACGcAUUa-CGUCGGCGu -5'
33098 3' -53.2 NC_007497.1 + 42059 0.67 0.678218
Target:  5'- -aGACGAUCUGCcacguugacGUGAgGCGGCCu-- -3'
miRNA:   3'- cgCUGCUAGACG---------CAUUaCGUCGGcgu -5'
33098 3' -53.2 NC_007497.1 + 25787 0.87 0.043167
Target:  5'- cGCGACGGUCUGC--AcgGCGGCCGCAu -3'
miRNA:   3'- -CGCUGCUAGACGcaUuaCGUCGGCGU- -5'
33098 3' -53.2 NC_007497.1 + 13475 0.72 0.407533
Target:  5'- -gGACGcuucgCUGCGUAucagGUGCAGaCCGCGa -3'
miRNA:   3'- cgCUGCua---GACGCAU----UACGUC-GGCGU- -5'
33098 3' -53.2 NC_007497.1 + 21032 0.7 0.499127
Target:  5'- aGCaGACGAUgaGCG-AGcGCGGCCGCc -3'
miRNA:   3'- -CG-CUGCUAgaCGCaUUaCGUCGGCGu -5'
33098 3' -53.2 NC_007497.1 + 28001 0.7 0.520736
Target:  5'- gGCGaucaGCGAgcugugcgcauUCgGCGUAAUGC-GCCGCAc -3'
miRNA:   3'- -CGC----UGCU-----------AGaCGCAUUACGuCGGCGU- -5'
33098 3' -53.2 NC_007497.1 + 34280 0.68 0.610113
Target:  5'- cGCGAUGcgaGUCUgGCGU-AUGCAuCCGCGa -3'
miRNA:   3'- -CGCUGC---UAGA-CGCAuUACGUcGGCGU- -5'
33098 3' -53.2 NC_007497.1 + 34679 0.68 0.621475
Target:  5'- uGCGucGCGAUCgcuacuucGCGcucgGCGGCCGCGa -3'
miRNA:   3'- -CGC--UGCUAGa-------CGCauuaCGUCGGCGU- -5'
33098 3' -53.2 NC_007497.1 + 40528 0.66 0.765914
Target:  5'- gGCGACGcacacgccgcucAUC-GCGUGAUGCucGGCgGCc -3'
miRNA:   3'- -CGCUGC------------UAGaCGCAUUACG--UCGgCGu -5'
33098 3' -53.2 NC_007497.1 + 18627 0.72 0.417192
Target:  5'- cCGACGGUCccgGCGUGcagggGCAGCCGa- -3'
miRNA:   3'- cGCUGCUAGa--CGCAUua---CGUCGGCgu -5'
33098 3' -53.2 NC_007497.1 + 9661 0.71 0.436922
Target:  5'- cGCGgaGCGAUC-GCG--AUGCGGCUGCGg -3'
miRNA:   3'- -CGC--UGCUAGaCGCauUACGUCGGCGU- -5'
33098 3' -53.2 NC_007497.1 + 31139 0.71 0.488471
Target:  5'- uGCGGCGucccCUGCGgcccGUGCGGCgGCc -3'
miRNA:   3'- -CGCUGCua--GACGCau--UACGUCGgCGu -5'
33098 3' -53.2 NC_007497.1 + 27990 0.7 0.509883
Target:  5'- gGCGuauCGAUCgGCGcUGAUGCGgGCUGCu -3'
miRNA:   3'- -CGCu--GCUAGaCGC-AUUACGU-CGGCGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.