miRNA display CGI


Results 1 - 20 of 41 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33098 5' -58.3 NC_007497.1 + 560 1.09 0.00037
Target:  5'- uGCUGCGACGACAGUGCGCACCCAGCGc -3'
miRNA:   3'- -CGACGCUGCUGUCACGCGUGGGUCGC- -5'
33098 5' -58.3 NC_007497.1 + 758 0.69 0.331205
Target:  5'- cCUGCGGuCGAUAGcuUGCGCucgauugcaGCCCAuGCGg -3'
miRNA:   3'- cGACGCU-GCUGUC--ACGCG---------UGGGU-CGC- -5'
33098 5' -58.3 NC_007497.1 + 2443 0.69 0.31548
Target:  5'- cGCUGCGAaacaUGGCGGUGCuGCGCU--GCGu -3'
miRNA:   3'- -CGACGCU----GCUGUCACG-CGUGGguCGC- -5'
33098 5' -58.3 NC_007497.1 + 2548 0.66 0.486808
Target:  5'- uGC-GCGcCGGCGGccgcgGCGCAUCCuuGCGa -3'
miRNA:   3'- -CGaCGCuGCUGUCa----CGCGUGGGu-CGC- -5'
33098 5' -58.3 NC_007497.1 + 4198 0.66 0.507375
Target:  5'- --aGCGuCGAUGGcGCGCGCCgGGUa -3'
miRNA:   3'- cgaCGCuGCUGUCaCGCGUGGgUCGc -5'
33098 5' -58.3 NC_007497.1 + 4922 0.66 0.476673
Target:  5'- --aGCGGCuuuuCAGUGCGaACCCAGUu -3'
miRNA:   3'- cgaCGCUGcu--GUCACGCgUGGGUCGc -5'
33098 5' -58.3 NC_007497.1 + 8330 0.68 0.379126
Target:  5'- cGCUGCGGCucGGCAGgacgcuugccgagcUGCGCGCgCAGa- -3'
miRNA:   3'- -CGACGCUG--CUGUC--------------ACGCGUGgGUCgc -5'
33098 5' -58.3 NC_007497.1 + 9680 0.7 0.300326
Target:  5'- gGCUGCGGCGaaacuGCAGaaCGCACaggCGGCGg -3'
miRNA:   3'- -CGACGCUGC-----UGUCacGCGUGg--GUCGC- -5'
33098 5' -58.3 NC_007497.1 + 10777 0.68 0.372996
Target:  5'- gGCcGCGGcCGACAGgggcgcGCGCACgCUGGCa -3'
miRNA:   3'- -CGaCGCU-GCUGUCa-----CGCGUG-GGUCGc -5'
33098 5' -58.3 NC_007497.1 + 11529 0.72 0.221127
Target:  5'- uGCUGgaaGAUGAauaGGUGCucaGCACCCAGCc -3'
miRNA:   3'- -CGACg--CUGCUg--UCACG---CGUGGGUCGc -5'
33098 5' -58.3 NC_007497.1 + 11612 0.74 0.164857
Target:  5'- aGCUGCuACcGCAuUGCgGCGCCCAGCGa -3'
miRNA:   3'- -CGACGcUGcUGUcACG-CGUGGGUCGC- -5'
33098 5' -58.3 NC_007497.1 + 12173 0.66 0.485789
Target:  5'- cGCUGCGcgaGCGGCAuugGCGCcuguguucgguugGCUCGGCa -3'
miRNA:   3'- -CGACGC---UGCUGUca-CGCG-------------UGGGUCGc -5'
33098 5' -58.3 NC_007497.1 + 14279 0.66 0.507375
Target:  5'- -aUGCGugG-CAGcugGCGCAUgcacugcgucgCCAGCGa -3'
miRNA:   3'- cgACGCugCuGUCa--CGCGUG-----------GGUCGC- -5'
33098 5' -58.3 NC_007497.1 + 15964 0.68 0.390688
Target:  5'- cGCUGUcGCGAUGG-GCGCuucgaugauGCUCGGCGg -3'
miRNA:   3'- -CGACGcUGCUGUCaCGCG---------UGGGUCGC- -5'
33098 5' -58.3 NC_007497.1 + 16466 0.66 0.517796
Target:  5'- uGCUGCGugGAC--UGCGgCGgCCuGCu -3'
miRNA:   3'- -CGACGCugCUGucACGC-GUgGGuCGc -5'
33098 5' -58.3 NC_007497.1 + 18001 0.67 0.408918
Target:  5'- gGCgauCGACGACGGcGCGCAgaUUCAGCa -3'
miRNA:   3'- -CGac-GCUGCUGUCaCGCGU--GGGUCGc -5'
33098 5' -58.3 NC_007497.1 + 20884 0.71 0.264918
Target:  5'- cCUGCaauGGCGACAcgaaggacGUGCGCGCcggCCAGCGc -3'
miRNA:   3'- cGACG---CUGCUGU--------CACGCGUG---GGUCGC- -5'
33098 5' -58.3 NC_007497.1 + 21281 0.67 0.427669
Target:  5'- cGCUGCugGGCG-CGGcgGCGgGCgCCGGCGu -3'
miRNA:   3'- -CGACG--CUGCuGUCa-CGCgUG-GGUCGC- -5'
33098 5' -58.3 NC_007497.1 + 23273 0.71 0.245343
Target:  5'- gGCUGCGACGAgcUGGUcgacacgcugcuGCagGCugCCAGCGg -3'
miRNA:   3'- -CGACGCUGCU--GUCA------------CG--CGugGGUCGC- -5'
33098 5' -58.3 NC_007497.1 + 26886 0.68 0.381774
Target:  5'- cGCUGaCGACGcgguACAGcUGCGCGgUgAGCGc -3'
miRNA:   3'- -CGAC-GCUGC----UGUC-ACGCGUgGgUCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.