miRNA display CGI


Results 1 - 20 of 41 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33098 5' -58.3 NC_007497.1 + 16466 0.66 0.517796
Target:  5'- uGCUGCGugGAC--UGCGgCGgCCuGCu -3'
miRNA:   3'- -CGACGCugCUGucACGC-GUgGGuCGc -5'
33098 5' -58.3 NC_007497.1 + 27996 0.67 0.437234
Target:  5'- -gUGuCGGCGAUcagcgagcuGUGCGCAUUCGGCGu -3'
miRNA:   3'- cgAC-GCUGCUGu--------CACGCGUGGGUCGC- -5'
33098 5' -58.3 NC_007497.1 + 38158 0.67 0.437234
Target:  5'- cGC-GcCGGCGACcGUgGCGCGCCUgAGCGc -3'
miRNA:   3'- -CGaC-GCUGCUGuCA-CGCGUGGG-UCGC- -5'
33098 5' -58.3 NC_007497.1 + 40514 0.67 0.456725
Target:  5'- gGCgugGCGuuucCGGCGGUa-GCGCCCGGCu -3'
miRNA:   3'- -CGa--CGCu---GCUGUCAcgCGUGGGUCGc -5'
33098 5' -58.3 NC_007497.1 + 4922 0.66 0.476673
Target:  5'- --aGCGGCuuuuCAGUGCGaACCCAGUu -3'
miRNA:   3'- cgaCGCUGcu--GUCACGCgUGGGUCGc -5'
33098 5' -58.3 NC_007497.1 + 27509 0.66 0.476673
Target:  5'- -aUGCGACGACAGcucccgGC-C-CCCAGUa -3'
miRNA:   3'- cgACGCUGCUGUCa-----CGcGuGGGUCGc -5'
33098 5' -58.3 NC_007497.1 + 2548 0.66 0.486808
Target:  5'- uGC-GCGcCGGCGGccgcgGCGCAUCCuuGCGa -3'
miRNA:   3'- -CGaCGCuGCUGUCa----CGCGUGGGu-CGC- -5'
33098 5' -58.3 NC_007497.1 + 41109 0.66 0.486808
Target:  5'- cGCgGUGACGcCGGUGCcCuCCCAGUu -3'
miRNA:   3'- -CGaCGCUGCuGUCACGcGuGGGUCGc -5'
33098 5' -58.3 NC_007497.1 + 14279 0.66 0.507375
Target:  5'- -aUGCGugG-CAGcugGCGCAUgcacugcgucgCCAGCGa -3'
miRNA:   3'- cgACGCugCuGUCa--CGCGUG-----------GGUCGC- -5'
33098 5' -58.3 NC_007497.1 + 27009 0.67 0.418229
Target:  5'- --gGCGcGCGACuGUGCGaCGCCCgacGGCa -3'
miRNA:   3'- cgaCGC-UGCUGuCACGC-GUGGG---UCGc -5'
33098 5' -58.3 NC_007497.1 + 36421 0.68 0.399736
Target:  5'- -gUGCGAacuCGGCAGccgacaucUGCGCGCgCAGCu -3'
miRNA:   3'- cgACGCU---GCUGUC--------ACGCGUGgGUCGc -5'
33098 5' -58.3 NC_007497.1 + 26886 0.68 0.381774
Target:  5'- cGCUGaCGACGcgguACAGcUGCGCGgUgAGCGc -3'
miRNA:   3'- -CGAC-GCUGC----UGUC-ACGCGUgGgUCGC- -5'
33098 5' -58.3 NC_007497.1 + 30218 0.75 0.128397
Target:  5'- aGCgGCGACGACAGcgugaacucgaccUGCaCGCCCGGCu -3'
miRNA:   3'- -CGaCGCUGCUGUC-------------ACGcGUGGGUCGc -5'
33098 5' -58.3 NC_007497.1 + 11612 0.74 0.164857
Target:  5'- aGCUGCuACcGCAuUGCgGCGCCCAGCGa -3'
miRNA:   3'- -CGACGcUGcUGUcACG-CGUGGGUCGC- -5'
33098 5' -58.3 NC_007497.1 + 11529 0.72 0.221127
Target:  5'- uGCUGgaaGAUGAauaGGUGCucaGCACCCAGCc -3'
miRNA:   3'- -CGACg--CUGCUg--UCACG---CGUGGGUCGc -5'
33098 5' -58.3 NC_007497.1 + 23273 0.71 0.245343
Target:  5'- gGCUGCGACGAgcUGGUcgacacgcugcuGCagGCugCCAGCGg -3'
miRNA:   3'- -CGACGCUGCU--GUCA------------CG--CGugGGUCGC- -5'
33098 5' -58.3 NC_007497.1 + 33985 0.71 0.251731
Target:  5'- uGCUGCGGCGucCAu--CGCugCCAGCGu -3'
miRNA:   3'- -CGACGCUGCu-GUcacGCGugGGUCGC- -5'
33098 5' -58.3 NC_007497.1 + 758 0.69 0.331205
Target:  5'- cCUGCGGuCGAUAGcuUGCGCucgauugcaGCCCAuGCGg -3'
miRNA:   3'- cGACGCU-GCUGUC--ACGCG---------UGGGU-CGC- -5'
33098 5' -58.3 NC_007497.1 + 43101 0.69 0.339281
Target:  5'- uUUGCGGCgcuccagcacgGACGG-GUGCGCCCAaGCGu -3'
miRNA:   3'- cGACGCUG-----------CUGUCaCGCGUGGGU-CGC- -5'
33098 5' -58.3 NC_007497.1 + 32741 0.68 0.381774
Target:  5'- aGCUgGUGAacGCuuccucgGCGCGCCCAGCGg -3'
miRNA:   3'- -CGA-CGCUgcUGuca----CGCGUGGGUCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.