miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33100 3' -55.6 NC_007497.1 + 23242 0.66 0.655218
Target:  5'- gCGCccacgCCUCUGCCGC---AGCCGGu -3'
miRNA:   3'- -GCGuua--GGAGACGGUGcagUCGGUCc -5'
33100 3' -55.6 NC_007497.1 + 2521 0.66 0.655218
Target:  5'- uGCGGUCC--UGCCACuUCuGCCcGGg -3'
miRNA:   3'- gCGUUAGGagACGGUGcAGuCGGuCC- -5'
33100 3' -55.6 NC_007497.1 + 11660 0.66 0.632954
Target:  5'- uCGCAA-CCUCgcgcgGCC-CGgaaccggcaCGGCCGGGa -3'
miRNA:   3'- -GCGUUaGGAGa----CGGuGCa--------GUCGGUCC- -5'
33100 3' -55.6 NC_007497.1 + 43091 0.66 0.621815
Target:  5'- gCGCAAUCuCUUUGCgGCGcucCAGCaCGGa -3'
miRNA:   3'- -GCGUUAG-GAGACGgUGCa--GUCG-GUCc -5'
33100 3' -55.6 NC_007497.1 + 37612 0.66 0.610686
Target:  5'- aCGCGAUCga-UGaUCugGUCGGCCAGc -3'
miRNA:   3'- -GCGUUAGgagAC-GGugCAGUCGGUCc -5'
33100 3' -55.6 NC_007497.1 + 22940 0.66 0.610686
Target:  5'- cCGCuGUCgUC-GCCGCcccgcaugCGGCCAGGg -3'
miRNA:   3'- -GCGuUAGgAGaCGGUGca------GUCGGUCC- -5'
33100 3' -55.6 NC_007497.1 + 32168 0.67 0.566452
Target:  5'- uCGCcAUCaUCUGCgaCGCGUCGGCCGu- -3'
miRNA:   3'- -GCGuUAGgAGACG--GUGCAGUCGGUcc -5'
33100 3' -55.6 NC_007497.1 + 26127 0.67 0.565355
Target:  5'- aGUAGUCCUCguaUGCCGCcucaucgguaGUCGgcugccccugcacGCCGGGa -3'
miRNA:   3'- gCGUUAGGAG---ACGGUG----------CAGU-------------CGGUCC- -5'
33100 3' -55.6 NC_007497.1 + 24037 0.67 0.544628
Target:  5'- aGC-GUCUUCUucGgCACGUCAGCCAu- -3'
miRNA:   3'- gCGuUAGGAGA--CgGUGCAGUCGGUcc -5'
33100 3' -55.6 NC_007497.1 + 29525 0.68 0.491411
Target:  5'- uGCGcgCCUC-GCgGCGcUCGGCCGGc -3'
miRNA:   3'- gCGUuaGGAGaCGgUGC-AGUCGGUCc -5'
33100 3' -55.6 NC_007497.1 + 12344 0.71 0.366248
Target:  5'- uGCGA-CCggcgGCCACGUCacggGGCCGGGc -3'
miRNA:   3'- gCGUUaGGaga-CGGUGCAG----UCGGUCC- -5'
33100 3' -55.6 NC_007497.1 + 39771 0.72 0.324307
Target:  5'- cCGCGucGUCgaggaUCUGCUGCGUagCAGCCGGGu -3'
miRNA:   3'- -GCGU--UAGg----AGACGGUGCA--GUCGGUCC- -5'
33100 3' -55.6 NC_007497.1 + 4844 0.74 0.238587
Target:  5'- gCGCcag-CUCUGCCGCGUCcAGCCGGu -3'
miRNA:   3'- -GCGuuagGAGACGGUGCAG-UCGGUCc -5'
33100 3' -55.6 NC_007497.1 + 890 1.1 0.000658
Target:  5'- uCGCAAUCCUCUGCCACGUCAGCCAGGc -3'
miRNA:   3'- -GCGUUAGGAGACGGUGCAGUCGGUCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.