miRNA display CGI


Results 1 - 20 of 26 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33100 5' -53.8 NC_007497.1 + 26261 0.66 0.772187
Target:  5'- aGCCCCuGAuacgacguGGACGCCU--GcgGAUaCGCg -3'
miRNA:   3'- -UGGGG-CU--------UCUGCGGAagCuaCUA-GCG- -5'
33100 5' -53.8 NC_007497.1 + 13887 0.66 0.761859
Target:  5'- gGCCgCCGcagGGGACGCCgcaug-GGUCGCc -3'
miRNA:   3'- -UGG-GGC---UUCUGCGGaagcuaCUAGCG- -5'
33100 5' -53.8 NC_007497.1 + 33194 0.66 0.761859
Target:  5'- gGCCgCgCGAAucGACGCCUgaUCGcgGAUCa- -3'
miRNA:   3'- -UGG-G-GCUU--CUGCGGA--AGCuaCUAGcg -5'
33100 5' -53.8 NC_007497.1 + 42821 0.66 0.761859
Target:  5'- uGCCCCGAcGcCGCCg-CGAUGcggcguuccGUCGUc -3'
miRNA:   3'- -UGGGGCUuCuGCGGaaGCUAC---------UAGCG- -5'
33100 5' -53.8 NC_007497.1 + 6905 0.66 0.740802
Target:  5'- --gCCGAGGGCGCaaUUCGuacggaGAUCGCg -3'
miRNA:   3'- uggGGCUUCUGCGg-AAGCua----CUAGCG- -5'
33100 5' -53.8 NC_007497.1 + 35561 0.66 0.740801
Target:  5'- uGCCCCGGcccAUGCCgcgCGc-GAUCGCg -3'
miRNA:   3'- -UGGGGCUuc-UGCGGaa-GCuaCUAGCG- -5'
33100 5' -53.8 NC_007497.1 + 32443 0.66 0.730096
Target:  5'- gGCCCCGu-GACGUggcCGccGGUCGCa -3'
miRNA:   3'- -UGGGGCuuCUGCGgaaGCuaCUAGCG- -5'
33100 5' -53.8 NC_007497.1 + 475 0.67 0.719291
Target:  5'- uGCUCCGgcGGCaCCgccgCGGUuGAUCGCc -3'
miRNA:   3'- -UGGGGCuuCUGcGGaa--GCUA-CUAGCG- -5'
33100 5' -53.8 NC_007497.1 + 40593 0.67 0.71929
Target:  5'- -aCCCGgcGcGCGCCaucgacgcUUCGAUGAgCGCc -3'
miRNA:   3'- ugGGGCuuC-UGCGG--------AAGCUACUaGCG- -5'
33100 5' -53.8 NC_007497.1 + 15251 0.67 0.697422
Target:  5'- cAUCCCGcGGACGCCggcCGAgcgcCGCg -3'
miRNA:   3'- -UGGGGCuUCUGCGGaa-GCUacuaGCG- -5'
33100 5' -53.8 NC_007497.1 + 42787 0.67 0.69632
Target:  5'- cGCCCCGucAGGGgcuucguCGCCUUCGAUa--CGCu -3'
miRNA:   3'- -UGGGGC--UUCU-------GCGGAAGCUAcuaGCG- -5'
33100 5' -53.8 NC_007497.1 + 36558 0.67 0.686383
Target:  5'- gGCCgCCGAGcucGAuCGCCUUCGugaccacccGAUCGUg -3'
miRNA:   3'- -UGG-GGCUU---CU-GCGGAAGCua-------CUAGCG- -5'
33100 5' -53.8 NC_007497.1 + 41964 0.67 0.685276
Target:  5'- gACCCCGcuGACGCCaucaaUCGAcaagucacgcaggUGAaacaccUCGCg -3'
miRNA:   3'- -UGGGGCuuCUGCGGa----AGCU-------------ACU------AGCG- -5'
33100 5' -53.8 NC_007497.1 + 16864 0.68 0.664157
Target:  5'- cACCCCaAAGGCGUCUacgggGAUGAagGCg -3'
miRNA:   3'- -UGGGGcUUCUGCGGAag---CUACUagCG- -5'
33100 5' -53.8 NC_007497.1 + 26050 0.68 0.664157
Target:  5'- gGCCaUCGGAGGCGUgaUCGAgucGAUCGg -3'
miRNA:   3'- -UGG-GGCUUCUGCGgaAGCUa--CUAGCg -5'
33100 5' -53.8 NC_007497.1 + 9209 0.68 0.664157
Target:  5'- -gCCCGgcGugGCCgaCGc-GAUCGCg -3'
miRNA:   3'- ugGGGCuuCugCGGaaGCuaCUAGCG- -5'
33100 5' -53.8 NC_007497.1 + 39295 0.68 0.652991
Target:  5'- aACCCCGA---UGCggUCGAUGAUCa- -3'
miRNA:   3'- -UGGGGCUucuGCGgaAGCUACUAGcg -5'
33100 5' -53.8 NC_007497.1 + 41419 0.68 0.640687
Target:  5'- gGCaCCGA--GCGCCUUCGAgaagaaagcggcuUGGUCGUu -3'
miRNA:   3'- -UGgGGCUucUGCGGAAGCU-------------ACUAGCG- -5'
33100 5' -53.8 NC_007497.1 + 9911 0.69 0.597078
Target:  5'- aAUCgCCGG-GACGCCguaugCGGccgUGAUCGCg -3'
miRNA:   3'- -UGG-GGCUuCUGCGGaa---GCU---ACUAGCG- -5'
33100 5' -53.8 NC_007497.1 + 28651 0.69 0.574859
Target:  5'- -gCCCGAGcucGCGaCCUUCGAaccggUGAUCGUg -3'
miRNA:   3'- ugGGGCUUc--UGC-GGAAGCU-----ACUAGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.