miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33101 3' -56.2 NC_007497.1 + 4856 0.66 0.604866
Target:  5'- cCGCGUCC---AGCCGGUUucGAaGGCCGg -3'
miRNA:   3'- -GCGUAGGcacUCGGUCGA--CUaUCGGC- -5'
33101 3' -56.2 NC_007497.1 + 15082 0.66 0.604866
Target:  5'- uCGCAUCCGaacgGcacGGCgCAGCcGAgcaUGGCCGa -3'
miRNA:   3'- -GCGUAGGCa---C---UCG-GUCGaCU---AUCGGC- -5'
33101 3' -56.2 NC_007497.1 + 6555 0.66 0.582659
Target:  5'- gCGUacaaAUCCuUGGGCUGGCUGAccugcaGGCCGa -3'
miRNA:   3'- -GCG----UAGGcACUCGGUCGACUa-----UCGGC- -5'
33101 3' -56.2 NC_007497.1 + 5575 0.66 0.582659
Target:  5'- gCGCGUCgGcgGcGGCCuGCUGAauccggAGCCGa -3'
miRNA:   3'- -GCGUAGgCa-C-UCGGuCGACUa-----UCGGC- -5'
33101 3' -56.2 NC_007497.1 + 34997 0.66 0.571615
Target:  5'- uCGCAUCCGUguaucgaaucGAGCCGGC-GAUcaacGCgGa -3'
miRNA:   3'- -GCGUAGGCA----------CUCGGUCGaCUAu---CGgC- -5'
33101 3' -56.2 NC_007497.1 + 172 0.67 0.538819
Target:  5'- aGCGUCUGUauguuggucGGGUCgAGCUGG-AGCCGu -3'
miRNA:   3'- gCGUAGGCA---------CUCGG-UCGACUaUCGGC- -5'
33101 3' -56.2 NC_007497.1 + 8674 0.67 0.517314
Target:  5'- aGgAUgCGUGGGCUGGCgucGAcGGCCGg -3'
miRNA:   3'- gCgUAgGCACUCGGUCGa--CUaUCGGC- -5'
33101 3' -56.2 NC_007497.1 + 41216 0.68 0.47233
Target:  5'- aCGCAUCCGgccgcacgucgaauUGAGCCgcgccaAGCcGGUGGUCa -3'
miRNA:   3'- -GCGUAGGC--------------ACUCGG------UCGaCUAUCGGc -5'
33101 3' -56.2 NC_007497.1 + 23333 0.68 0.455093
Target:  5'- aGCAUCCGcGAGCgCGGCUGuucguuGuuGg -3'
miRNA:   3'- gCGUAGGCaCUCG-GUCGACuau---CggC- -5'
33101 3' -56.2 NC_007497.1 + 15248 0.69 0.425531
Target:  5'- gCGCAUCCcgcgGAcGCCGGCcGAgcGCCGc -3'
miRNA:   3'- -GCGUAGGca--CU-CGGUCGaCUauCGGC- -5'
33101 3' -56.2 NC_007497.1 + 32832 0.7 0.335835
Target:  5'- gCGCugcaaCGUGAGCC-GCUGAucgagaUAGCCGc -3'
miRNA:   3'- -GCGuag--GCACUCGGuCGACU------AUCGGC- -5'
33101 3' -56.2 NC_007497.1 + 33419 0.75 0.184237
Target:  5'- cCGCGUCCGaUGGGCCAGCgcaggcgcauUGAc-GCCGa -3'
miRNA:   3'- -GCGUAGGC-ACUCGGUCG----------ACUauCGGC- -5'
33101 3' -56.2 NC_007497.1 + 987 0.97 0.004439
Target:  5'- aCGCGgccgacgaUCCGUGAGCCAGCUGAUAGCCGc -3'
miRNA:   3'- -GCGU--------AGGCACUCGGUCGACUAUCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.