Results 21 - 28 of 28 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
33102 | 5' | -55.9 | NC_007497.1 | + | 28505 | 0.67 | 0.580017 |
Target: 5'- gUCgaGCACCUUCGCGCGcgcGGUCGaauggagGCUg -3' miRNA: 3'- -AGggUGUGGAAGCGCGC---CUAGUa------CGG- -5' |
|||||||
33102 | 5' | -55.9 | NC_007497.1 | + | 35146 | 0.67 | 0.586612 |
Target: 5'- cUCCGCGCCUUCucaagagacaccaGCGCGGcagCGcuuuccuccuuuguUGCCg -3' miRNA: 3'- aGGGUGUGGAAG-------------CGCGCCua-GU--------------ACGG- -5' |
|||||||
33102 | 5' | -55.9 | NC_007497.1 | + | 21277 | 0.67 | 0.587712 |
Target: 5'- gUCgCGCugCUggGCGCGGcggcgggcgccggcGUCGUGCa -3' miRNA: 3'- -AGgGUGugGAagCGCGCC--------------UAGUACGg -5' |
|||||||
33102 | 5' | -55.9 | NC_007497.1 | + | 33204 | 0.67 | 0.591016 |
Target: 5'- aUCgACGCCUgauCGCGGAUCAgGCUc -3' miRNA: 3'- aGGgUGUGGAagcGCGCCUAGUaCGG- -5' |
|||||||
33102 | 5' | -55.9 | NC_007497.1 | + | 27094 | 0.66 | 0.60205 |
Target: 5'- -aCCGCGCCggcagCGgaGCGGAUacgGCCg -3' miRNA: 3'- agGGUGUGGaa---GCg-CGCCUAguaCGG- -5' |
|||||||
33102 | 5' | -55.9 | NC_007497.1 | + | 1689 | 0.66 | 0.60205 |
Target: 5'- aUCCagUACGCCUUCGUGCGcagCAcucccgGCCg -3' miRNA: 3'- -AGG--GUGUGGAAGCGCGCcuaGUa-----CGG- -5' |
|||||||
33102 | 5' | -55.9 | NC_007497.1 | + | 40336 | 0.66 | 0.624188 |
Target: 5'- gCCUugACCUcggucggcccuUcCGCGCGGAcggaaaUgAUGCCu -3' miRNA: 3'- aGGGugUGGA-----------A-GCGCGCCU------AgUACGG- -5' |
|||||||
33102 | 5' | -55.9 | NC_007497.1 | + | 12262 | 0.66 | 0.635272 |
Target: 5'- -gCUAgGCCgcaGCGCGGAU--UGCCg -3' miRNA: 3'- agGGUgUGGaagCGCGCCUAguACGG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home