miRNA display CGI


Results 1 - 20 of 28 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33102 5' -55.9 NC_007497.1 + 42446 0.69 0.464564
Target:  5'- -gCCGCGCaagaaaccgauggCGCGCGGAUCGUGgucCCg -3'
miRNA:   3'- agGGUGUGgaa----------GCGCGCCUAGUAC---GG- -5'
33102 5' -55.9 NC_007497.1 + 40336 0.66 0.624188
Target:  5'- gCCUugACCUcggucggcccuUcCGCGCGGAcggaaaUgAUGCCu -3'
miRNA:   3'- aGGGugUGGA-----------A-GCGCGCCU------AgUACGG- -5'
33102 5' -55.9 NC_007497.1 + 36781 0.78 0.118492
Target:  5'- gCCCGcCGCCUcgCGCaGCGGAUCGaGCCa -3'
miRNA:   3'- aGGGU-GUGGAa-GCG-CGCCUAGUaCGG- -5'
33102 5' -55.9 NC_007497.1 + 36312 0.67 0.53654
Target:  5'- aCCUuCACCUUCGCGCccugcgccuGGAaaacUGCCg -3'
miRNA:   3'- aGGGuGUGGAAGCGCG---------CCUagu-ACGG- -5'
33102 5' -55.9 NC_007497.1 + 35568 0.68 0.504689
Target:  5'- gCCCAUGCCg-CGCGCG-AUCGcgucgGCCa -3'
miRNA:   3'- aGGGUGUGGaaGCGCGCcUAGUa----CGG- -5'
33102 5' -55.9 NC_007497.1 + 35146 0.67 0.586612
Target:  5'- cUCCGCGCCUUCucaagagacaccaGCGCGGcagCGcuuuccuccuuuguUGCCg -3'
miRNA:   3'- aGGGUGUGGAAG-------------CGCGCCua-GU--------------ACGG- -5'
33102 5' -55.9 NC_007497.1 + 34856 0.71 0.369203
Target:  5'- -gCCGCGgUcUCGCGCGcGAUCAcgGCCg -3'
miRNA:   3'- agGGUGUgGaAGCGCGC-CUAGUa-CGG- -5'
33102 5' -55.9 NC_007497.1 + 33905 0.68 0.504689
Target:  5'- gUUCCACG-CUUCG-GCGGc-CAUGCCg -3'
miRNA:   3'- -AGGGUGUgGAAGCgCGCCuaGUACGG- -5'
33102 5' -55.9 NC_007497.1 + 33239 0.67 0.558159
Target:  5'- gUCCgACAgCUUCGUGCGcuUCGccGCCa -3'
miRNA:   3'- -AGGgUGUgGAAGCGCGCcuAGUa-CGG- -5'
33102 5' -55.9 NC_007497.1 + 33204 0.67 0.591016
Target:  5'- aUCgACGCCUgauCGCGGAUCAgGCUc -3'
miRNA:   3'- aGGgUGUGGAagcGCGCCUAGUaCGG- -5'
33102 5' -55.9 NC_007497.1 + 30219 0.72 0.281637
Target:  5'- gCCUugcauCACCUUCGCcgcgaaguagucGCGGAgcgaCAUGCCg -3'
miRNA:   3'- aGGGu----GUGGAAGCG------------CGCCUa---GUACGG- -5'
33102 5' -55.9 NC_007497.1 + 30101 0.68 0.483913
Target:  5'- aUCUCGuucaugcuuCACCUcgCGCGCGGAgCAUGgCg -3'
miRNA:   3'- -AGGGU---------GUGGAa-GCGCGCCUaGUACgG- -5'
33102 5' -55.9 NC_007497.1 + 29869 0.71 0.369203
Target:  5'- gCCCGCAgCacUCGCGCGGAUacucggcgaGUGCg -3'
miRNA:   3'- aGGGUGUgGa-AGCGCGCCUAg--------UACGg -5'
33102 5' -55.9 NC_007497.1 + 28728 0.72 0.284513
Target:  5'- gCCCGCGCCaUUCGCGCaucaacccguugucaGcGAUCGUGUa -3'
miRNA:   3'- aGGGUGUGG-AAGCGCG---------------C-CUAGUACGg -5'
33102 5' -55.9 NC_007497.1 + 28505 0.67 0.580017
Target:  5'- gUCgaGCACCUUCGCGCGcgcGGUCGaauggagGCUg -3'
miRNA:   3'- -AGggUGUGGAAGCGCGC---CUAGUa------CGG- -5'
33102 5' -55.9 NC_007497.1 + 27222 0.74 0.228893
Target:  5'- aUCCguCACCUcggCGCGCGGcUCcgGCUg -3'
miRNA:   3'- -AGGguGUGGAa--GCGCGCCuAGuaCGG- -5'
33102 5' -55.9 NC_007497.1 + 27134 0.75 0.186759
Target:  5'- gCCC-CGCCUU-GCGCGGAUCGgcaauagcgaucaccUGCCc -3'
miRNA:   3'- aGGGuGUGGAAgCGCGCCUAGU---------------ACGG- -5'
33102 5' -55.9 NC_007497.1 + 27094 0.66 0.60205
Target:  5'- -aCCGCGCCggcagCGgaGCGGAUacgGCCg -3'
miRNA:   3'- agGGUGUGGaa---GCg-CGCCUAguaCGG- -5'
33102 5' -55.9 NC_007497.1 + 21277 0.67 0.587712
Target:  5'- gUCgCGCugCUggGCGCGGcggcgggcgccggcGUCGUGCa -3'
miRNA:   3'- -AGgGUGugGAagCGCGCC--------------UAGUACGg -5'
33102 5' -55.9 NC_007497.1 + 16770 0.7 0.39611
Target:  5'- cCCCGCACCcgCGCcgGCGGAcgagCA-GCCc -3'
miRNA:   3'- aGGGUGUGGaaGCG--CGCCUa---GUaCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.