miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33105 5' -52.3 NC_007497.1 + 10702 0.66 0.832887
Target:  5'- -cGUCGcGGCGACgc-GCGGGGGagaCGa -3'
miRNA:   3'- gcUAGCuUCGCUGaaaUGCUCCCg--GC- -5'
33105 5' -52.3 NC_007497.1 + 6927 0.66 0.823607
Target:  5'- cCGGUCGcccaGGGCGACau--CGAGugccGGCCGg -3'
miRNA:   3'- -GCUAGC----UUCGCUGaaauGCUC----CCGGC- -5'
33105 5' -52.3 NC_007497.1 + 8791 0.67 0.763873
Target:  5'- gCGAUCGAGGCuGC---GCGcGGGUCGc -3'
miRNA:   3'- -GCUAGCUUCGcUGaaaUGCuCCCGGC- -5'
33105 5' -52.3 NC_007497.1 + 17249 0.67 0.762827
Target:  5'- -cAUCGcGAGCGugUUccgcggcaucgccUACuGGGGGCCGg -3'
miRNA:   3'- gcUAGC-UUCGCugAA-------------AUG-CUCCCGGC- -5'
33105 5' -52.3 NC_007497.1 + 6038 0.68 0.75335
Target:  5'- gCGAUCGAGGcCGGCacUGC-AGGGCa- -3'
miRNA:   3'- -GCUAGCUUC-GCUGaaAUGcUCCCGgc -5'
33105 5' -52.3 NC_007497.1 + 1994 0.68 0.751229
Target:  5'- gCGAUCGAAgGCGACgaagccccugACGGGGcGuuGu -3'
miRNA:   3'- -GCUAGCUU-CGCUGaaa-------UGCUCC-CggC- -5'
33105 5' -52.3 NC_007497.1 + 8016 0.68 0.731926
Target:  5'- uGcgCGAGGCGGCgg-GCGucGaGCCGg -3'
miRNA:   3'- gCuaGCUUCGCUGaaaUGCucC-CGGC- -5'
33105 5' -52.3 NC_007497.1 + 10963 0.69 0.664402
Target:  5'- aCGAUCGAgAGCGACac--CGAGucaucgaGGCCGa -3'
miRNA:   3'- -GCUAGCU-UCGCUGaaauGCUC-------CCGGC- -5'
33105 5' -52.3 NC_007497.1 + 9236 0.7 0.631721
Target:  5'- uCGAUUGAAcgGGCUUgaUGCGuGGGGCCGa -3'
miRNA:   3'- -GCUAGCUUcgCUGAA--AUGC-UCCCGGC- -5'
33105 5' -52.3 NC_007497.1 + 398 0.71 0.542306
Target:  5'- --uUCGuccacAAGCGGCUggGCGAGGGCgGc -3'
miRNA:   3'- gcuAGC-----UUCGCUGAaaUGCUCCCGgC- -5'
33105 5' -52.3 NC_007497.1 + 6792 1.09 0.001855
Target:  5'- cCGAUCGAAGCGACUUUACGAGGGCCGc -3'
miRNA:   3'- -GCUAGCUUCGCUGAAAUGCUCCCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.