miRNA display CGI


Results 1 - 20 of 45 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33107 3' -53.1 NC_007497.1 + 7178 1.13 0.000764
Target:  5'- gCCGAGCAACGCGAAGAUCAGGUGCGCc -3'
miRNA:   3'- -GGCUCGUUGCGCUUCUAGUCCACGCG- -5'
33107 3' -53.1 NC_007497.1 + 4250 0.8 0.16086
Target:  5'- gCCGAGCAucACGCGAuGAgCGGcGUGUGCg -3'
miRNA:   3'- -GGCUCGU--UGCGCUuCUaGUC-CACGCG- -5'
33107 3' -53.1 NC_007497.1 + 17986 0.76 0.255286
Target:  5'- gCCGGGCAaguACGCGgcGAUCGacgacGGcGCGCa -3'
miRNA:   3'- -GGCUCGU---UGCGCuuCUAGU-----CCaCGCG- -5'
33107 3' -53.1 NC_007497.1 + 30005 0.75 0.303497
Target:  5'- gCCGAGCAGuCgGCGAcgagcaagccagacGGAUCGacgucGGUGCGCu -3'
miRNA:   3'- -GGCUCGUU-G-CGCU--------------UCUAGU-----CCACGCG- -5'
33107 3' -53.1 NC_007497.1 + 25789 0.73 0.418953
Target:  5'- -aGAGCGGCGCGAAGuUC-GGUGaCGg -3'
miRNA:   3'- ggCUCGUUGCGCUUCuAGuCCAC-GCg -5'
33107 3' -53.1 NC_007497.1 + 2493 0.71 0.479056
Target:  5'- uCCGGGCggUGCuucu-UCAGGUGCGa -3'
miRNA:   3'- -GGCUCGuuGCGcuucuAGUCCACGCg -5'
33107 3' -53.1 NC_007497.1 + 41092 0.71 0.510653
Target:  5'- aCCGAGCAGCGCuacgccGAccAUCuGGagGCGCg -3'
miRNA:   3'- -GGCUCGUUGCG------CUucUAGuCCa-CGCG- -5'
33107 3' -53.1 NC_007497.1 + 20670 0.71 0.52138
Target:  5'- uUCGgcGGCAAUGCGAGGGguggguugCAGGaacaugGCGCg -3'
miRNA:   3'- -GGC--UCGUUGCGCUUCUa-------GUCCa-----CGCG- -5'
33107 3' -53.1 NC_007497.1 + 29780 0.7 0.554051
Target:  5'- uUCGGGCGcgaGCGCGAAcuggucGGUCGGaGUcgGCGCg -3'
miRNA:   3'- -GGCUCGU---UGCGCUU------CUAGUC-CA--CGCG- -5'
33107 3' -53.1 NC_007497.1 + 5285 0.7 0.569509
Target:  5'- aCGGGCAAcgcccgcuuCGCGAugaaccgcaacacgcAGcGUCAGGUGCGg -3'
miRNA:   3'- gGCUCGUU---------GCGCU---------------UC-UAGUCCACGCg -5'
33107 3' -53.1 NC_007497.1 + 23468 0.7 0.575056
Target:  5'- gUCG-GCGaucucgcGCGCGcuGAUCAGGUGCa- -3'
miRNA:   3'- -GGCuCGU-------UGCGCuuCUAGUCCACGcg -5'
33107 3' -53.1 NC_007497.1 + 2685 0.7 0.576167
Target:  5'- aCCGuGCGGCGCGA-GAUCccGGUcuuCGCg -3'
miRNA:   3'- -GGCuCGUUGCGCUuCUAGu-CCAc--GCG- -5'
33107 3' -53.1 NC_007497.1 + 4566 0.7 0.576167
Target:  5'- uCCGAcGCGuugGCGAAGGUCgacaAGGUcaGCGCu -3'
miRNA:   3'- -GGCU-CGUug-CGCUUCUAG----UCCA--CGCG- -5'
33107 3' -53.1 NC_007497.1 + 8767 0.7 0.586186
Target:  5'- gCGAGCGugcagguaacgguACGCGc-GAUCgAGGcUGCGCg -3'
miRNA:   3'- gGCUCGU-------------UGCGCuuCUAG-UCC-ACGCG- -5'
33107 3' -53.1 NC_007497.1 + 11443 0.7 0.587302
Target:  5'- aUCGAGCAGCG-GAucGcgCAGcUGCGCg -3'
miRNA:   3'- -GGCUCGUUGCgCUu-CuaGUCcACGCG- -5'
33107 3' -53.1 NC_007497.1 + 40657 0.69 0.598475
Target:  5'- aCGAGUGcCGCGAGcGGUUuauggcugcGGUGCGCg -3'
miRNA:   3'- gGCUCGUuGCGCUU-CUAGu--------CCACGCG- -5'
33107 3' -53.1 NC_007497.1 + 13389 0.69 0.609678
Target:  5'- aCGcaaGGUAACGaCGGcacacAGAUCAGG-GCGCu -3'
miRNA:   3'- gGC---UCGUUGC-GCU-----UCUAGUCCaCGCG- -5'
33107 3' -53.1 NC_007497.1 + 42088 0.69 0.620902
Target:  5'- cUCGAGUuaucCGCGAAGAcCGGGaucucGCGCc -3'
miRNA:   3'- -GGCUCGuu--GCGCUUCUaGUCCa----CGCG- -5'
33107 3' -53.1 NC_007497.1 + 1129 0.69 0.620902
Target:  5'- --aGGCGAC-CGGAGGcCAGGUGuCGCg -3'
miRNA:   3'- ggcUCGUUGcGCUUCUaGUCCAC-GCG- -5'
33107 3' -53.1 NC_007497.1 + 35484 0.69 0.632136
Target:  5'- gCCGGcauuccGCAGCGCGucGAUCAGGUucuCGa -3'
miRNA:   3'- -GGCU------CGUUGCGCuuCUAGUCCAc--GCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.