miRNA display CGI


Results 1 - 20 of 45 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33107 3' -53.1 NC_007497.1 + 1129 0.69 0.620902
Target:  5'- --aGGCGAC-CGGAGGcCAGGUGuCGCg -3'
miRNA:   3'- ggcUCGUUGcGCUUCUaGUCCAC-GCG- -5'
33107 3' -53.1 NC_007497.1 + 1716 0.66 0.813767
Target:  5'- cCCGGccGCAcccaGCGggGAUCAcucgGCGCg -3'
miRNA:   3'- -GGCU--CGUug--CGCuuCUAGUcca-CGCG- -5'
33107 3' -53.1 NC_007497.1 + 2493 0.71 0.479056
Target:  5'- uCCGGGCggUGCuucu-UCAGGUGCGa -3'
miRNA:   3'- -GGCUCGuuGCGcuucuAGUCCACGCg -5'
33107 3' -53.1 NC_007497.1 + 2685 0.7 0.576167
Target:  5'- aCCGuGCGGCGCGA-GAUCccGGUcuuCGCg -3'
miRNA:   3'- -GGCuCGUUGCGCUuCUAGu-CCAc--GCG- -5'
33107 3' -53.1 NC_007497.1 + 3690 0.69 0.643369
Target:  5'- aCCG-GCGucacCGCGAagcGGAUCAGcGcgGCGCu -3'
miRNA:   3'- -GGCuCGUu---GCGCU---UCUAGUC-Ca-CGCG- -5'
33107 3' -53.1 NC_007497.1 + 4250 0.8 0.16086
Target:  5'- gCCGAGCAucACGCGAuGAgCGGcGUGUGCg -3'
miRNA:   3'- -GGCUCGU--UGCGCUuCUaGUC-CACGCG- -5'
33107 3' -53.1 NC_007497.1 + 4566 0.7 0.576167
Target:  5'- uCCGAcGCGuugGCGAAGGUCgacaAGGUcaGCGCu -3'
miRNA:   3'- -GGCU-CGUug-CGCUUCUAG----UCCA--CGCG- -5'
33107 3' -53.1 NC_007497.1 + 5285 0.7 0.569509
Target:  5'- aCGGGCAAcgcccgcuuCGCGAugaaccgcaacacgcAGcGUCAGGUGCGg -3'
miRNA:   3'- gGCUCGUU---------GCGCU---------------UC-UAGUCCACGCg -5'
33107 3' -53.1 NC_007497.1 + 5818 0.68 0.654592
Target:  5'- cCCGAGCGgucgGCGCacuGGA--GGGUGCGg -3'
miRNA:   3'- -GGCUCGU----UGCGcu-UCUagUCCACGCg -5'
33107 3' -53.1 NC_007497.1 + 7178 1.13 0.000764
Target:  5'- gCCGAGCAACGCGAAGAUCAGGUGCGCc -3'
miRNA:   3'- -GGCUCGUUGCGCUUCUAGUCCACGCG- -5'
33107 3' -53.1 NC_007497.1 + 8767 0.7 0.586186
Target:  5'- gCGAGCGugcagguaacgguACGCGc-GAUCgAGGcUGCGCg -3'
miRNA:   3'- gGCUCGU-------------UGCGCuuCUAG-UCC-ACGCG- -5'
33107 3' -53.1 NC_007497.1 + 10106 0.68 0.699155
Target:  5'- gCCGAGCGcgaaguaGCGAucgcGAcgCAGGcGCGCg -3'
miRNA:   3'- -GGCUCGUug-----CGCUu---CUa-GUCCaCGCG- -5'
33107 3' -53.1 NC_007497.1 + 10324 0.68 0.676962
Target:  5'- gCGAGCccAAUGCGAugcGAUCGGGaUG-GCa -3'
miRNA:   3'- gGCUCG--UUGCGCUu--CUAGUCC-ACgCG- -5'
33107 3' -53.1 NC_007497.1 + 10361 0.67 0.731905
Target:  5'- gCGAGCAGCGCGAcgucgaguuuGAUCGacaugcagGCGCc -3'
miRNA:   3'- gGCUCGUUGCGCUu---------CUAGUcca-----CGCG- -5'
33107 3' -53.1 NC_007497.1 + 11443 0.7 0.587302
Target:  5'- aUCGAGCAGCG-GAucGcgCAGcUGCGCg -3'
miRNA:   3'- -GGCUCGUUGCgCUu-CuaGUCcACGCG- -5'
33107 3' -53.1 NC_007497.1 + 11725 0.67 0.710156
Target:  5'- uCCGAGCGucaGCGAG----AGGUcGCGCg -3'
miRNA:   3'- -GGCUCGUug-CGCUUcuagUCCA-CGCG- -5'
33107 3' -53.1 NC_007497.1 + 13389 0.69 0.609678
Target:  5'- aCGcaaGGUAACGaCGGcacacAGAUCAGG-GCGCu -3'
miRNA:   3'- gGC---UCGUUGC-GCU-----UCUAGUCCaCGCG- -5'
33107 3' -53.1 NC_007497.1 + 13454 0.66 0.81089
Target:  5'- aCGGGCucgacGAUGCGAucuGGAcgcuucgcugcguaUCAGGUGCa- -3'
miRNA:   3'- gGCUCG-----UUGCGCU---UCU--------------AGUCCACGcg -5'
33107 3' -53.1 NC_007497.1 + 16059 0.68 0.676962
Target:  5'- aCGGGUugauGCGCGAauGGcgCGGGcGCGUc -3'
miRNA:   3'- gGCUCGu---UGCGCU--UCuaGUCCaCGCG- -5'
33107 3' -53.1 NC_007497.1 + 17986 0.76 0.255286
Target:  5'- gCCGGGCAaguACGCGgcGAUCGacgacGGcGCGCa -3'
miRNA:   3'- -GGCUCGU---UGCGCuuCUAGU-----CCaCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.