miRNA display CGI


Results 1 - 20 of 20 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33113 3' -53.3 NC_007497.1 + 37205 0.66 0.759104
Target:  5'- gAGUAGUuuccguCGAcCGAGAauUCGCCGGGa-- -3'
miRNA:   3'- -UCGUCGu-----GCU-GCUCU--AGUGGCCUaaa -5'
33113 3' -53.3 NC_007497.1 + 11683 0.66 0.737482
Target:  5'- -cCGGCACGGcCGGGAguaGCCGGGc-- -3'
miRNA:   3'- ucGUCGUGCU-GCUCUag-UGGCCUaaa -5'
33113 3' -53.3 NC_007497.1 + 38675 0.66 0.726493
Target:  5'- cGCgAGCGCGGuuacgcgcuuguCGAGAuuccgUCGCCGGAg-- -3'
miRNA:   3'- uCG-UCGUGCU------------GCUCU-----AGUGGCCUaaa -5'
33113 3' -53.3 NC_007497.1 + 21284 0.66 0.715401
Target:  5'- uGCugGGCGCGGCGGcGggCGCCGGcgUc -3'
miRNA:   3'- uCG--UCGUGCUGCU-CuaGUGGCCuaAa -5'
33113 3' -53.3 NC_007497.1 + 39388 0.66 0.714287
Target:  5'- aAGCGGgguggauuacggaCACgGGCGAGcgCGCCGGAc-- -3'
miRNA:   3'- -UCGUC-------------GUG-CUGCUCuaGUGGCCUaaa -5'
33113 3' -53.3 NC_007497.1 + 14693 0.66 0.704221
Target:  5'- aGGUgaAGCAUGaACGAGAUCACCa----- -3'
miRNA:   3'- -UCG--UCGUGC-UGCUCUAGUGGccuaaa -5'
33113 3' -53.3 NC_007497.1 + 40417 0.67 0.692963
Target:  5'- cGCGGCuacaagauGCGuaGCGAGA-CGCCGGAa-- -3'
miRNA:   3'- uCGUCG--------UGC--UGCUCUaGUGGCCUaaa -5'
33113 3' -53.3 NC_007497.1 + 407 0.67 0.658861
Target:  5'- aAGCGGCugGGCGAGGgcggCAagaaGGAa-- -3'
miRNA:   3'- -UCGUCGugCUGCUCUa---GUgg--CCUaaa -5'
33113 3' -53.3 NC_007497.1 + 7979 0.69 0.533974
Target:  5'- cGCAGCACGcAUccauGUCACCGGAUUc -3'
miRNA:   3'- uCGUCGUGC-UGcuc-UAGUGGCCUAAa -5'
33113 3' -53.3 NC_007497.1 + 18450 0.69 0.521836
Target:  5'- cGCAGCGCacCGAGAUCugguacaGCCGGAc-- -3'
miRNA:   3'- uCGUCGUGcuGCUCUAG-------UGGCCUaaa -5'
33113 3' -53.3 NC_007497.1 + 1091 0.7 0.50113
Target:  5'- gGGCAGCGCGcGCGAuGAUCACUGc---- -3'
miRNA:   3'- -UCGUCGUGC-UGCU-CUAGUGGCcuaaa -5'
33113 3' -53.3 NC_007497.1 + 29615 0.7 0.490378
Target:  5'- gGGUcguGUACGGCGAGAgcgcgCGCUGGAUg- -3'
miRNA:   3'- -UCGu--CGUGCUGCUCUa----GUGGCCUAaa -5'
33113 3' -53.3 NC_007497.1 + 21484 0.7 0.478677
Target:  5'- gAGCAGCGCcGCGAGAUCgaggcucucgaacACCaGAUUg -3'
miRNA:   3'- -UCGUCGUGcUGCUCUAG-------------UGGcCUAAa -5'
33113 3' -53.3 NC_007497.1 + 11864 0.7 0.469206
Target:  5'- aAGaCGGCACGuuGGGcUCGCCGGAa-- -3'
miRNA:   3'- -UC-GUCGUGCugCUCuAGUGGCCUaaa -5'
33113 3' -53.3 NC_007497.1 + 21323 0.72 0.408698
Target:  5'- -uCAGCGCGcGCGAGAUCGCCGa---- -3'
miRNA:   3'- ucGUCGUGC-UGCUCUAGUGGCcuaaa -5'
33113 3' -53.3 NC_007497.1 + 217 0.72 0.408698
Target:  5'- cGguGCGCGACGAuguGAUCGCCGa---- -3'
miRNA:   3'- uCguCGUGCUGCU---CUAGUGGCcuaaa -5'
33113 3' -53.3 NC_007497.1 + 26758 0.72 0.399094
Target:  5'- uGGCGGCACGACc--GUCACCGGc--- -3'
miRNA:   3'- -UCGUCGUGCUGcucUAGUGGCCuaaa -5'
33113 3' -53.3 NC_007497.1 + 16248 0.75 0.273294
Target:  5'- cGGCGGCG-GugGAGAgUCGCCGGAc-- -3'
miRNA:   3'- -UCGUCGUgCugCUCU-AGUGGCCUaaa -5'
33113 3' -53.3 NC_007497.1 + 4904 0.76 0.220288
Target:  5'- gGGCGGCACGACGAGcg-GCUGGGUc- -3'
miRNA:   3'- -UCGUCGUGCUGCUCuagUGGCCUAaa -5'
33113 3' -53.3 NC_007497.1 + 11037 1.05 0.002054
Target:  5'- aAGCAGCACGACGAGAUCACCGGAUUUc -3'
miRNA:   3'- -UCGUCGUGCUGCUCUAGUGGCCUAAA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.