miRNA display CGI


Results 1 - 20 of 29 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33113 5' -50.7 NC_007497.1 + 11071 1.14 0.001046
Target:  5'- gCGAAAGGCUCGGCAAUCUGCUUCACCg -3'
miRNA:   3'- -GCUUUCCGAGCCGUUAGACGAAGUGG- -5'
33113 5' -50.7 NC_007497.1 + 33071 0.74 0.45852
Target:  5'- uGAAAGcGCaUCGGCuAUCgaUGCUUCACUc -3'
miRNA:   3'- gCUUUC-CG-AGCCGuUAG--ACGAAGUGG- -5'
33113 5' -50.7 NC_007497.1 + 29178 0.72 0.568162
Target:  5'- uCGAAAcGCUCGGCucgCUGUUccagCACCa -3'
miRNA:   3'- -GCUUUcCGAGCCGuuaGACGAa---GUGG- -5'
33113 5' -50.7 NC_007497.1 + 7882 0.72 0.568163
Target:  5'- ----cGGCaacUCGGCGagGUCUGCUgcacUCACCg -3'
miRNA:   3'- gcuuuCCG---AGCCGU--UAGACGA----AGUGG- -5'
33113 5' -50.7 NC_007497.1 + 13448 0.72 0.579574
Target:  5'- aGAGcaacGGGCUCGacgauGCGAUCUggacGCUUCGCUg -3'
miRNA:   3'- gCUU----UCCGAGC-----CGUUAGA----CGAAGUGG- -5'
33113 5' -50.7 NC_007497.1 + 16978 0.71 0.6256
Target:  5'- uGAAAGGCgcaUGGCAAUCgaUGC--CGCCg -3'
miRNA:   3'- gCUUUCCGa--GCCGUUAG--ACGaaGUGG- -5'
33113 5' -50.7 NC_007497.1 + 30080 0.7 0.693443
Target:  5'- uCGAGcucGGGCauggUGGUGAUCucguucaUGCUUCACCu -3'
miRNA:   3'- -GCUU---UCCGa---GCCGUUAG-------ACGAAGUGG- -5'
33113 5' -50.7 NC_007497.1 + 27091 0.69 0.738301
Target:  5'- uGAAGGGCgauuccgUCGcGCGAUgaGCUcgCGCCg -3'
miRNA:   3'- gCUUUCCG-------AGC-CGUUAgaCGAa-GUGG- -5'
33113 5' -50.7 NC_007497.1 + 18429 0.69 0.76115
Target:  5'- gGGAcGGCUCGGCAggCgacacGCagcgCACCg -3'
miRNA:   3'- gCUUuCCGAGCCGUuaGa----CGaa--GUGG- -5'
33113 5' -50.7 NC_007497.1 + 10149 0.69 0.76115
Target:  5'- cCGAacGAGGCgccaccgCGGCGAcCgccgGCUUgGCCg -3'
miRNA:   3'- -GCU--UUCCGa------GCCGUUaGa---CGAAgUGG- -5'
33113 5' -50.7 NC_007497.1 + 41681 0.69 0.761151
Target:  5'- uCGAucuGGUgauuUCGGUucucGAUCUGCUgCGCCg -3'
miRNA:   3'- -GCUuu-CCG----AGCCG----UUAGACGAaGUGG- -5'
33113 5' -50.7 NC_007497.1 + 36518 0.68 0.782317
Target:  5'- gCGGAAGGCUuuuuucCGGCuuccucccGGUCUGCggcgaggcCGCCg -3'
miRNA:   3'- -GCUUUCCGA------GCCG--------UUAGACGaa------GUGG- -5'
33113 5' -50.7 NC_007497.1 + 20233 0.68 0.802797
Target:  5'- cCGGGAaccGGCUgGGCAguuAUCggacgGCcUUCGCCg -3'
miRNA:   3'- -GCUUU---CCGAgCCGU---UAGa----CG-AAGUGG- -5'
33113 5' -50.7 NC_007497.1 + 26324 0.68 0.802798
Target:  5'- ----cGGCUCGGCG-UCcgGCUgUACCa -3'
miRNA:   3'- gcuuuCCGAGCCGUuAGa-CGAaGUGG- -5'
33113 5' -50.7 NC_007497.1 + 15149 0.68 0.802798
Target:  5'- gGAAGGGCUCagGGCAuacAUCcagcgcgcGCUcUCGCCg -3'
miRNA:   3'- gCUUUCCGAG--CCGU---UAGa-------CGA-AGUGG- -5'
33113 5' -50.7 NC_007497.1 + 6390 0.68 0.812748
Target:  5'- aCGAA--GCUCGGCGAUC-GCgagCAUCc -3'
miRNA:   3'- -GCUUucCGAGCCGUUAGaCGaa-GUGG- -5'
33113 5' -50.7 NC_007497.1 + 20833 0.67 0.841304
Target:  5'- uCGAGGGGCUCGaGCucGUC-GCgcgGCCg -3'
miRNA:   3'- -GCUUUCCGAGC-CGu-UAGaCGaagUGG- -5'
33113 5' -50.7 NC_007497.1 + 18184 0.67 0.841304
Target:  5'- gCGGAAGGauaaCGGCGA-CUGggUCGCUg -3'
miRNA:   3'- -GCUUUCCga--GCCGUUaGACgaAGUGG- -5'
33113 5' -50.7 NC_007497.1 + 12202 0.67 0.850352
Target:  5'- uCGGuuGGCUCGGCAaugcgAUCggacuugGCgcgUCuGCCg -3'
miRNA:   3'- -GCUuuCCGAGCCGU-----UAGa------CGa--AG-UGG- -5'
33113 5' -50.7 NC_007497.1 + 32363 0.67 0.859149
Target:  5'- uGAucGGGCUCGGCGAgugGaucaaUCACCc -3'
miRNA:   3'- gCUu-UCCGAGCCGUUagaCga---AGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.