Results 1 - 20 of 29 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
33113 | 5' | -50.7 | NC_007497.1 | + | 11071 | 1.14 | 0.001046 |
Target: 5'- gCGAAAGGCUCGGCAAUCUGCUUCACCg -3' miRNA: 3'- -GCUUUCCGAGCCGUUAGACGAAGUGG- -5' |
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33113 | 5' | -50.7 | NC_007497.1 | + | 15560 | 0.66 | 0.891643 |
Target: 5'- gGAucGGCgCGGCAGUg-GCgaUCGCCc -3' miRNA: 3'- gCUuuCCGaGCCGUUAgaCGa-AGUGG- -5' |
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33113 | 5' | -50.7 | NC_007497.1 | + | 33096 | 0.66 | 0.891643 |
Target: 5'- uCGGccaGCUCGGCGucgAUCUGCgcgCugCg -3' miRNA: 3'- -GCUuucCGAGCCGU---UAGACGaa-GugG- -5' |
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33113 | 5' | -50.7 | NC_007497.1 | + | 30179 | 0.66 | 0.883939 |
Target: 5'- aCGAucuGGCgugCGGgAAcCUGCUgucCGCCg -3' miRNA: 3'- -GCUuu-CCGa--GCCgUUaGACGAa--GUGG- -5' |
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33113 | 5' | -50.7 | NC_007497.1 | + | 18767 | 0.66 | 0.867685 |
Target: 5'- uGAAAGcGCUggCGGCGAagCUGCgcagauaCGCCg -3' miRNA: 3'- gCUUUC-CGA--GCCGUUa-GACGaa-----GUGG- -5' |
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33113 | 5' | -50.7 | NC_007497.1 | + | 26324 | 0.68 | 0.802798 |
Target: 5'- ----cGGCUCGGCG-UCcgGCUgUACCa -3' miRNA: 3'- gcuuuCCGAGCCGUuAGa-CGAaGUGG- -5' |
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33113 | 5' | -50.7 | NC_007497.1 | + | 15149 | 0.68 | 0.802798 |
Target: 5'- gGAAGGGCUCagGGCAuacAUCcagcgcgcGCUcUCGCCg -3' miRNA: 3'- gCUUUCCGAG--CCGU---UAGa-------CGA-AGUGG- -5' |
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33113 | 5' | -50.7 | NC_007497.1 | + | 36518 | 0.68 | 0.782317 |
Target: 5'- gCGGAAGGCUuuuuucCGGCuuccucccGGUCUGCggcgaggcCGCCg -3' miRNA: 3'- -GCUUUCCGA------GCCG--------UUAGACGaa------GUGG- -5' |
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33113 | 5' | -50.7 | NC_007497.1 | + | 41681 | 0.69 | 0.761151 |
Target: 5'- uCGAucuGGUgauuUCGGUucucGAUCUGCUgCGCCg -3' miRNA: 3'- -GCUuu-CCG----AGCCG----UUAGACGAaGUGG- -5' |
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33113 | 5' | -50.7 | NC_007497.1 | + | 16978 | 0.71 | 0.6256 |
Target: 5'- uGAAAGGCgcaUGGCAAUCgaUGC--CGCCg -3' miRNA: 3'- gCUUUCCGa--GCCGUUAG--ACGaaGUGG- -5' |
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33113 | 5' | -50.7 | NC_007497.1 | + | 13448 | 0.72 | 0.579574 |
Target: 5'- aGAGcaacGGGCUCGacgauGCGAUCUggacGCUUCGCUg -3' miRNA: 3'- gCUU----UCCGAGC-----CGUUAGA----CGAAGUGG- -5' |
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33113 | 5' | -50.7 | NC_007497.1 | + | 7882 | 0.72 | 0.568163 |
Target: 5'- ----cGGCaacUCGGCGagGUCUGCUgcacUCACCg -3' miRNA: 3'- gcuuuCCG---AGCCGU--UAGACGA----AGUGG- -5' |
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33113 | 5' | -50.7 | NC_007497.1 | + | 6390 | 0.68 | 0.812748 |
Target: 5'- aCGAA--GCUCGGCGAUC-GCgagCAUCc -3' miRNA: 3'- -GCUUucCGAGCCGUUAGaCGaa-GUGG- -5' |
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33113 | 5' | -50.7 | NC_007497.1 | + | 20233 | 0.68 | 0.802797 |
Target: 5'- cCGGGAaccGGCUgGGCAguuAUCggacgGCcUUCGCCg -3' miRNA: 3'- -GCUUU---CCGAgCCGU---UAGa----CG-AAGUGG- -5' |
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33113 | 5' | -50.7 | NC_007497.1 | + | 18429 | 0.69 | 0.76115 |
Target: 5'- gGGAcGGCUCGGCAggCgacacGCagcgCACCg -3' miRNA: 3'- gCUUuCCGAGCCGUuaGa----CGaa--GUGG- -5' |
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33113 | 5' | -50.7 | NC_007497.1 | + | 10149 | 0.69 | 0.76115 |
Target: 5'- cCGAacGAGGCgccaccgCGGCGAcCgccgGCUUgGCCg -3' miRNA: 3'- -GCU--UUCCGa------GCCGUUaGa---CGAAgUGG- -5' |
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33113 | 5' | -50.7 | NC_007497.1 | + | 27091 | 0.69 | 0.738301 |
Target: 5'- uGAAGGGCgauuccgUCGcGCGAUgaGCUcgCGCCg -3' miRNA: 3'- gCUUUCCG-------AGC-CGUUAgaCGAa-GUGG- -5' |
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33113 | 5' | -50.7 | NC_007497.1 | + | 30080 | 0.7 | 0.693443 |
Target: 5'- uCGAGcucGGGCauggUGGUGAUCucguucaUGCUUCACCu -3' miRNA: 3'- -GCUU---UCCGa---GCCGUUAG-------ACGAAGUGG- -5' |
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33113 | 5' | -50.7 | NC_007497.1 | + | 29178 | 0.72 | 0.568162 |
Target: 5'- uCGAAAcGCUCGGCucgCUGUUccagCACCa -3' miRNA: 3'- -GCUUUcCGAGCCGuuaGACGAa---GUGG- -5' |
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33113 | 5' | -50.7 | NC_007497.1 | + | 12780 | 0.66 | 0.899057 |
Target: 5'- uCGAGGGGUUCGGUggcgauacgAcgCUGCgugugCGCa -3' miRNA: 3'- -GCUUUCCGAGCCG---------UuaGACGaa---GUGg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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