miRNA display CGI


Results 1 - 20 of 26 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33114 3' -51.2 NC_007497.1 + 36153 0.66 0.874681
Target:  5'- -cGUGAAGCGgaaGcgGGCgGG-GCGCg -3'
miRNA:   3'- cuCACUUCGUag-CuaUCGgCUaCGCG- -5'
33114 3' -51.2 NC_007497.1 + 28452 0.66 0.866367
Target:  5'- cGAGguuGGCGUCGAgcAGCgCGuAUGCGUu -3'
miRNA:   3'- -CUCacuUCGUAGCUa-UCG-GC-UACGCG- -5'
33114 3' -51.2 NC_007497.1 + 8680 0.66 0.84894
Target:  5'- -cGUGGgcuGGCGUCGAcGGCCGGcgGCu- -3'
miRNA:   3'- cuCACU---UCGUAGCUaUCGGCUa-CGcg -5'
33114 3' -51.2 NC_007497.1 + 1573 0.66 0.84894
Target:  5'- aGGUGAucgccgcuGGUAUCGAUGGCgGcgGCc- -3'
miRNA:   3'- cUCACU--------UCGUAGCUAUCGgCuaCGcg -5'
33114 3' -51.2 NC_007497.1 + 16742 0.66 0.830511
Target:  5'- cGAGUGcgaaAUcCGGcUGGCUGGUGCGCg -3'
miRNA:   3'- -CUCACuucgUA-GCU-AUCGGCUACGCG- -5'
33114 3' -51.2 NC_007497.1 + 5571 0.67 0.815101
Target:  5'- ---cGAAGCgcGUCGGcggcggccugcugaaUccggAGCCGAUGCGCg -3'
miRNA:   3'- cucaCUUCG--UAGCU---------------A----UCGGCUACGCG- -5'
33114 3' -51.2 NC_007497.1 + 27808 0.67 0.790985
Target:  5'- ---gGcGGCAUCGAUuGCC-AUGCGCc -3'
miRNA:   3'- cucaCuUCGUAGCUAuCGGcUACGCG- -5'
33114 3' -51.2 NC_007497.1 + 40658 0.67 0.780616
Target:  5'- cGAGUGccGCGagCGGUuuauGGCugCGGUGCGCg -3'
miRNA:   3'- -CUCACuuCGUa-GCUA----UCG--GCUACGCG- -5'
33114 3' -51.2 NC_007497.1 + 194 0.68 0.770078
Target:  5'- cGAGcUGGAGcCGUCuGUcGCCGcgGUGCGCg -3'
miRNA:   3'- -CUC-ACUUC-GUAGcUAuCGGC--UACGCG- -5'
33114 3' -51.2 NC_007497.1 + 3597 0.68 0.737574
Target:  5'- --uUGGAGCGUUGGaaucCCGAUGUGCg -3'
miRNA:   3'- cucACUUCGUAGCUauc-GGCUACGCG- -5'
33114 3' -51.2 NC_007497.1 + 10466 0.69 0.715297
Target:  5'- cGAGUGAAGCAggcgcaagCGGcGGCgacaagCGAUGuCGCg -3'
miRNA:   3'- -CUCACUUCGUa-------GCUaUCG------GCUAC-GCG- -5'
33114 3' -51.2 NC_007497.1 + 22956 0.69 0.704017
Target:  5'- aGAG-GAAGCAUCGGcAGCCcGU-CGCu -3'
miRNA:   3'- -CUCaCUUCGUAGCUaUCGGcUAcGCG- -5'
33114 3' -51.2 NC_007497.1 + 144 0.69 0.692659
Target:  5'- ---cGAcAGCAUCGGcGGCCGGgucGCGCc -3'
miRNA:   3'- cucaCU-UCGUAGCUaUCGGCUa--CGCG- -5'
33114 3' -51.2 NC_007497.1 + 23884 0.69 0.669762
Target:  5'- -cGUGAAGCGc---UGGCCGgcGCGCa -3'
miRNA:   3'- cuCACUUCGUagcuAUCGGCuaCGCG- -5'
33114 3' -51.2 NC_007497.1 + 792 0.7 0.658249
Target:  5'- --aUGcGGCAUCGAUcacGCCGAcgGCGCc -3'
miRNA:   3'- cucACuUCGUAGCUAu--CGGCUa-CGCG- -5'
33114 3' -51.2 NC_007497.1 + 4195 0.7 0.65479
Target:  5'- ---cGAAGCGUCGAUGgcgcgcGCCGGguauucccgguccaUGCGCc -3'
miRNA:   3'- cucaCUUCGUAGCUAU------CGGCU--------------ACGCG- -5'
33114 3' -51.2 NC_007497.1 + 33715 0.7 0.64671
Target:  5'- cGGUGAAGCA--GAUuGCCGAgccuuucGCGCa -3'
miRNA:   3'- cUCACUUCGUagCUAuCGGCUa------CGCG- -5'
33114 3' -51.2 NC_007497.1 + 27985 0.71 0.600519
Target:  5'- cGGUGGGcGUAUCGAUcggcGCUGAUGCGg -3'
miRNA:   3'- cUCACUU-CGUAGCUAu---CGGCUACGCg -5'
33114 3' -51.2 NC_007497.1 + 20742 0.71 0.589019
Target:  5'- ---aGAAGCA-CGAUGGCUGAcGUGCc -3'
miRNA:   3'- cucaCUUCGUaGCUAUCGGCUaCGCG- -5'
33114 3' -51.2 NC_007497.1 + 27104 0.71 0.577559
Target:  5'- cAGcGGAGCGgauaCGGccGCCGAUGCGCc -3'
miRNA:   3'- cUCaCUUCGUa---GCUauCGGCUACGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.