Results 1 - 20 of 26 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
33114 | 3' | -51.2 | NC_007497.1 | + | 36153 | 0.66 | 0.874681 |
Target: 5'- -cGUGAAGCGgaaGcgGGCgGG-GCGCg -3' miRNA: 3'- cuCACUUCGUag-CuaUCGgCUaCGCG- -5' |
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33114 | 3' | -51.2 | NC_007497.1 | + | 28452 | 0.66 | 0.866367 |
Target: 5'- cGAGguuGGCGUCGAgcAGCgCGuAUGCGUu -3' miRNA: 3'- -CUCacuUCGUAGCUa-UCG-GC-UACGCG- -5' |
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33114 | 3' | -51.2 | NC_007497.1 | + | 8680 | 0.66 | 0.84894 |
Target: 5'- -cGUGGgcuGGCGUCGAcGGCCGGcgGCu- -3' miRNA: 3'- cuCACU---UCGUAGCUaUCGGCUa-CGcg -5' |
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33114 | 3' | -51.2 | NC_007497.1 | + | 1573 | 0.66 | 0.84894 |
Target: 5'- aGGUGAucgccgcuGGUAUCGAUGGCgGcgGCc- -3' miRNA: 3'- cUCACU--------UCGUAGCUAUCGgCuaCGcg -5' |
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33114 | 3' | -51.2 | NC_007497.1 | + | 16742 | 0.66 | 0.830511 |
Target: 5'- cGAGUGcgaaAUcCGGcUGGCUGGUGCGCg -3' miRNA: 3'- -CUCACuucgUA-GCU-AUCGGCUACGCG- -5' |
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33114 | 3' | -51.2 | NC_007497.1 | + | 5571 | 0.67 | 0.815101 |
Target: 5'- ---cGAAGCgcGUCGGcggcggccugcugaaUccggAGCCGAUGCGCg -3' miRNA: 3'- cucaCUUCG--UAGCU---------------A----UCGGCUACGCG- -5' |
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33114 | 3' | -51.2 | NC_007497.1 | + | 27808 | 0.67 | 0.790985 |
Target: 5'- ---gGcGGCAUCGAUuGCC-AUGCGCc -3' miRNA: 3'- cucaCuUCGUAGCUAuCGGcUACGCG- -5' |
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33114 | 3' | -51.2 | NC_007497.1 | + | 40658 | 0.67 | 0.780616 |
Target: 5'- cGAGUGccGCGagCGGUuuauGGCugCGGUGCGCg -3' miRNA: 3'- -CUCACuuCGUa-GCUA----UCG--GCUACGCG- -5' |
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33114 | 3' | -51.2 | NC_007497.1 | + | 194 | 0.68 | 0.770078 |
Target: 5'- cGAGcUGGAGcCGUCuGUcGCCGcgGUGCGCg -3' miRNA: 3'- -CUC-ACUUC-GUAGcUAuCGGC--UACGCG- -5' |
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33114 | 3' | -51.2 | NC_007497.1 | + | 3597 | 0.68 | 0.737574 |
Target: 5'- --uUGGAGCGUUGGaaucCCGAUGUGCg -3' miRNA: 3'- cucACUUCGUAGCUauc-GGCUACGCG- -5' |
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33114 | 3' | -51.2 | NC_007497.1 | + | 10466 | 0.69 | 0.715297 |
Target: 5'- cGAGUGAAGCAggcgcaagCGGcGGCgacaagCGAUGuCGCg -3' miRNA: 3'- -CUCACUUCGUa-------GCUaUCG------GCUAC-GCG- -5' |
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33114 | 3' | -51.2 | NC_007497.1 | + | 22956 | 0.69 | 0.704017 |
Target: 5'- aGAG-GAAGCAUCGGcAGCCcGU-CGCu -3' miRNA: 3'- -CUCaCUUCGUAGCUaUCGGcUAcGCG- -5' |
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33114 | 3' | -51.2 | NC_007497.1 | + | 144 | 0.69 | 0.692659 |
Target: 5'- ---cGAcAGCAUCGGcGGCCGGgucGCGCc -3' miRNA: 3'- cucaCU-UCGUAGCUaUCGGCUa--CGCG- -5' |
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33114 | 3' | -51.2 | NC_007497.1 | + | 23884 | 0.69 | 0.669762 |
Target: 5'- -cGUGAAGCGc---UGGCCGgcGCGCa -3' miRNA: 3'- cuCACUUCGUagcuAUCGGCuaCGCG- -5' |
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33114 | 3' | -51.2 | NC_007497.1 | + | 792 | 0.7 | 0.658249 |
Target: 5'- --aUGcGGCAUCGAUcacGCCGAcgGCGCc -3' miRNA: 3'- cucACuUCGUAGCUAu--CGGCUa-CGCG- -5' |
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33114 | 3' | -51.2 | NC_007497.1 | + | 4195 | 0.7 | 0.65479 |
Target: 5'- ---cGAAGCGUCGAUGgcgcgcGCCGGguauucccgguccaUGCGCc -3' miRNA: 3'- cucaCUUCGUAGCUAU------CGGCU--------------ACGCG- -5' |
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33114 | 3' | -51.2 | NC_007497.1 | + | 33715 | 0.7 | 0.64671 |
Target: 5'- cGGUGAAGCA--GAUuGCCGAgccuuucGCGCa -3' miRNA: 3'- cUCACUUCGUagCUAuCGGCUa------CGCG- -5' |
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33114 | 3' | -51.2 | NC_007497.1 | + | 27985 | 0.71 | 0.600519 |
Target: 5'- cGGUGGGcGUAUCGAUcggcGCUGAUGCGg -3' miRNA: 3'- cUCACUU-CGUAGCUAu---CGGCUACGCg -5' |
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33114 | 3' | -51.2 | NC_007497.1 | + | 20742 | 0.71 | 0.589019 |
Target: 5'- ---aGAAGCA-CGAUGGCUGAcGUGCc -3' miRNA: 3'- cucaCUUCGUaGCUAUCGGCUaCGCG- -5' |
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33114 | 3' | -51.2 | NC_007497.1 | + | 27104 | 0.71 | 0.577559 |
Target: 5'- cAGcGGAGCGgauaCGGccGCCGAUGCGCc -3' miRNA: 3'- cUCaCUUCGUa---GCUauCGGCUACGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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