Results 21 - 40 of 42 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
33115 | 3' | -61.3 | NC_007497.1 | + | 17705 | 0.67 | 0.302693 |
Target: 5'- cGCUGCCGGcgcgguugucguguuGGACaaGGCGCCCGCa--- -3' miRNA: 3'- aCGGUGGCU---------------CCUG--CCGUGGGCGguuc -5' |
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33115 | 3' | -61.3 | NC_007497.1 | + | 17853 | 0.7 | 0.174443 |
Target: 5'- gGCCugagcuucggaaagcCCGAGGAUGGCgacuggaaguuguuGCCCGCCGc- -3' miRNA: 3'- aCGGu--------------GGCUCCUGCCG--------------UGGGCGGUuc -5' |
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33115 | 3' | -61.3 | NC_007497.1 | + | 18047 | 0.67 | 0.285444 |
Target: 5'- gUGCCGCCaucGGuACaGGCA-CCGCCGAGc -3' miRNA: 3'- -ACGGUGGcu-CC-UG-CCGUgGGCGGUUC- -5' |
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33115 | 3' | -61.3 | NC_007497.1 | + | 20404 | 0.66 | 0.370998 |
Target: 5'- cGCgAUCGAGGACGGacgcauucaACCCGgCu-- -3' miRNA: 3'- aCGgUGGCUCCUGCCg--------UGGGCgGuuc -5' |
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33115 | 3' | -61.3 | NC_007497.1 | + | 21845 | 0.66 | 0.362538 |
Target: 5'- gGCCGCaugCGGGGGCGGCgacgacagcgGCCCugacucGUCGGGg -3' miRNA: 3'- aCGGUG---GCUCCUGCCG----------UGGG------CGGUUC- -5' |
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33115 | 3' | -61.3 | NC_007497.1 | + | 23481 | 0.66 | 0.330052 |
Target: 5'- cGCgCGCUGAucaGGugcacgacgcCGGCGCCCGCCGc- -3' miRNA: 3'- aCG-GUGGCU---CCu---------GCCGUGGGCGGUuc -5' |
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33115 | 3' | -61.3 | NC_007497.1 | + | 24678 | 0.66 | 0.370998 |
Target: 5'- uUGCCgGCUGcAGG-CGGCACCUgGUCAAa -3' miRNA: 3'- -ACGG-UGGC-UCCuGCCGUGGG-CGGUUc -5' |
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33115 | 3' | -61.3 | NC_007497.1 | + | 26745 | 0.68 | 0.252017 |
Target: 5'- gUGCCuguACCGAuGGCGGCACgaCCGUCAc- -3' miRNA: 3'- -ACGG---UGGCUcCUGCCGUG--GGCGGUuc -5' |
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33115 | 3' | -61.3 | NC_007497.1 | + | 27465 | 0.68 | 0.26965 |
Target: 5'- cGCCGCCGuguacacguacaccGGaucuGACGGCAugUCCGCCGAu -3' miRNA: 3'- aCGGUGGC--------------UC----CUGCCGU--GGGCGGUUc -5' |
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33115 | 3' | -61.3 | NC_007497.1 | + | 27578 | 0.66 | 0.346022 |
Target: 5'- cUGCCugCGcGGGCGGCugCggggcgGCCGc- -3' miRNA: 3'- -ACGGugGCuCCUGCCGugGg-----CGGUuc -5' |
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33115 | 3' | -61.3 | NC_007497.1 | + | 30000 | 0.66 | 0.354212 |
Target: 5'- uUGCCGCCGAGcaguCGGCgacgaGCaaGCCAGa -3' miRNA: 3'- -ACGGUGGCUCcu--GCCG-----UGggCGGUUc -5' |
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33115 | 3' | -61.3 | NC_007497.1 | + | 32488 | 0.7 | 0.180076 |
Target: 5'- uUGCCGCCGGcGGCGGCcGCgaCGCCAu- -3' miRNA: 3'- -ACGGUGGCUcCUGCCG-UGg-GCGGUuc -5' |
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33115 | 3' | -61.3 | NC_007497.1 | + | 34492 | 0.73 | 0.109759 |
Target: 5'- cGCCACCGugccgacggucgucAGGAUgccgGGCAgCCCGCCGAc -3' miRNA: 3'- aCGGUGGC--------------UCCUG----CCGU-GGGCGGUUc -5' |
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33115 | 3' | -61.3 | NC_007497.1 | + | 37767 | 0.68 | 0.27167 |
Target: 5'- gGCCGCCGAacucgcgacGGACacguagccuuuGGCGCCC-CCGAc -3' miRNA: 3'- aCGGUGGCU---------CCUG-----------CCGUGGGcGGUUc -5' |
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33115 | 3' | -61.3 | NC_007497.1 | + | 38448 | 0.66 | 0.370998 |
Target: 5'- uUGCCACUGAcGaaGCGGaCGCUCGCCc-- -3' miRNA: 3'- -ACGGUGGCUcC--UGCC-GUGGGCGGuuc -5' |
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33115 | 3' | -61.3 | NC_007497.1 | + | 39250 | 0.68 | 0.264985 |
Target: 5'- gGCCGgCGaAGGcgguccugAUGGCGCUCGCCGAc -3' miRNA: 3'- aCGGUgGC-UCC--------UGCCGUGGGCGGUUc -5' |
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33115 | 3' | -61.3 | NC_007497.1 | + | 39984 | 0.68 | 0.27167 |
Target: 5'- cGCagaACgGAGGuGCGGCAUgaCGCCGAGc -3' miRNA: 3'- aCGg--UGgCUCC-UGCCGUGg-GCGGUUC- -5' |
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33115 | 3' | -61.3 | NC_007497.1 | + | 40627 | 0.69 | 0.23355 |
Target: 5'- uUGCCGCagcucGGGGCGGCAUgaCCGUCGAc -3' miRNA: 3'- -ACGGUGgc---UCCUGCCGUG--GGCGGUUc -5' |
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33115 | 3' | -61.3 | NC_007497.1 | + | 42554 | 0.69 | 0.23355 |
Target: 5'- cGUgGCCGAGGGCucgaaguaccuGGCGgCCUGCCGu- -3' miRNA: 3'- aCGgUGGCUCCUG-----------CCGU-GGGCGGUuc -5' |
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33115 | 3' | -61.3 | NC_007497.1 | + | 42809 | 0.66 | 0.337968 |
Target: 5'- gGCUuUCGAGGAaugGGCGCCCGUg--- -3' miRNA: 3'- aCGGuGGCUCCUg--CCGUGGGCGguuc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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