Results 1 - 20 of 42 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
33115 | 3' | -61.3 | NC_007497.1 | + | 24678 | 0.66 | 0.370998 |
Target: 5'- uUGCCgGCUGcAGG-CGGCACCUgGUCAAa -3' miRNA: 3'- -ACGG-UGGC-UCCuGCCGUGGG-CGGUUc -5' |
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33115 | 3' | -61.3 | NC_007497.1 | + | 13809 | 0.66 | 0.354211 |
Target: 5'- gGCCGCCGcauGGGCcGCACgggaCGCCGcAGg -3' miRNA: 3'- aCGGUGGCu--CCUGcCGUGg---GCGGU-UC- -5' |
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33115 | 3' | -61.3 | NC_007497.1 | + | 2445 | 0.66 | 0.354211 |
Target: 5'- cGCCGCUGGGcGuucgcGCGGCgACgCGCCAu- -3' miRNA: 3'- aCGGUGGCUC-C-----UGCCG-UGgGCGGUuc -5' |
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33115 | 3' | -61.3 | NC_007497.1 | + | 44653 | 0.66 | 0.346021 |
Target: 5'- gGCCGCCGAugcugucgcgGGGCuGuaGCCUGCCGc- -3' miRNA: 3'- aCGGUGGCU----------CCUG-CcgUGGGCGGUuc -5' |
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33115 | 3' | -61.3 | NC_007497.1 | + | 10895 | 0.66 | 0.346021 |
Target: 5'- cGCUACCGccccagcaaGGGGCGGCGaaCGUgGAGc -3' miRNA: 3'- aCGGUGGC---------UCCUGCCGUggGCGgUUC- -5' |
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33115 | 3' | -61.3 | NC_007497.1 | + | 23481 | 0.66 | 0.330052 |
Target: 5'- cGCgCGCUGAucaGGugcacgacgcCGGCGCCCGCCGc- -3' miRNA: 3'- aCG-GUGGCU---CCu---------GCCGUGGGCGGUuc -5' |
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33115 | 3' | -61.3 | NC_007497.1 | + | 13887 | 0.66 | 0.330052 |
Target: 5'- gGCCGCCGcagGGGACGccGCAUgggUCGCCGcAGg -3' miRNA: 3'- aCGGUGGC---UCCUGC--CGUG---GGCGGU-UC- -5' |
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33115 | 3' | -61.3 | NC_007497.1 | + | 10200 | 0.66 | 0.370998 |
Target: 5'- gUGCCGCgGucgcgcaaacGGCGGcCGCCCGCgCAGGc -3' miRNA: 3'- -ACGGUGgCuc--------CUGCC-GUGGGCG-GUUC- -5' |
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33115 | 3' | -61.3 | NC_007497.1 | + | 21845 | 0.66 | 0.362538 |
Target: 5'- gGCCGCaugCGGGGGCGGCgacgacagcgGCCCugacucGUCGGGg -3' miRNA: 3'- aCGGUG---GCUCCUGCCG----------UGGG------CGGUUC- -5' |
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33115 | 3' | -61.3 | NC_007497.1 | + | 17572 | 0.66 | 0.362537 |
Target: 5'- cGCgCGCCGAGGugACGGaUACCgaGCCGc- -3' miRNA: 3'- aCG-GUGGCUCC--UGCC-GUGGg-CGGUuc -5' |
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33115 | 3' | -61.3 | NC_007497.1 | + | 795 | 0.66 | 0.370998 |
Target: 5'- cGgCAUCGAucacgccGACGGCGCCCGUCu-- -3' miRNA: 3'- aCgGUGGCUc------CUGCCGUGGGCGGuuc -5' |
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33115 | 3' | -61.3 | NC_007497.1 | + | 38448 | 0.66 | 0.370998 |
Target: 5'- uUGCCACUGAcGaaGCGGaCGCUCGCCc-- -3' miRNA: 3'- -ACGGUGGCUcC--UGCC-GUGGGCGGuuc -5' |
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33115 | 3' | -61.3 | NC_007497.1 | + | 20404 | 0.66 | 0.370998 |
Target: 5'- cGCgAUCGAGGACGGacgcauucaACCCGgCu-- -3' miRNA: 3'- aCGgUGGCUCCUGCCg--------UGGGCgGuuc -5' |
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33115 | 3' | -61.3 | NC_007497.1 | + | 30000 | 0.66 | 0.354212 |
Target: 5'- uUGCCGCCGAGcaguCGGCgacgaGCaaGCCAGa -3' miRNA: 3'- -ACGGUGGCUCcu--GCCG-----UGggCGGUUc -5' |
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33115 | 3' | -61.3 | NC_007497.1 | + | 27578 | 0.66 | 0.346022 |
Target: 5'- cUGCCugCGcGGGCGGCugCggggcgGCCGc- -3' miRNA: 3'- -ACGGugGCuCCUGCCGugGg-----CGGUuc -5' |
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33115 | 3' | -61.3 | NC_007497.1 | + | 42809 | 0.66 | 0.337968 |
Target: 5'- gGCUuUCGAGGAaugGGCGCCCGUg--- -3' miRNA: 3'- aCGGuGGCUCCUg--CCGUGGGCGguuc -5' |
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33115 | 3' | -61.3 | NC_007497.1 | + | 44297 | 0.67 | 0.322273 |
Target: 5'- uUGCCGCCGuuGGcgaucaaccGCGGCGgugCCGCCGGa -3' miRNA: 3'- -ACGGUGGCu-CC---------UGCCGUg--GGCGGUUc -5' |
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33115 | 3' | -61.3 | NC_007497.1 | + | 13614 | 0.67 | 0.307129 |
Target: 5'- gGCCACUGAGGAaGaGCgGgCCGCCGc- -3' miRNA: 3'- aCGGUGGCUCCUgC-CG-UgGGCGGUuc -5' |
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33115 | 3' | -61.3 | NC_007497.1 | + | 3136 | 0.67 | 0.307129 |
Target: 5'- cUGUCuCgCGcucGGACGGCGCCgGCCAGc -3' miRNA: 3'- -ACGGuG-GCu--CCUGCCGUGGgCGGUUc -5' |
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33115 | 3' | -61.3 | NC_007497.1 | + | 10582 | 0.67 | 0.292535 |
Target: 5'- cGUCACugaCGAGGaucagGCGGCACUCGaCCGAu -3' miRNA: 3'- aCGGUG---GCUCC-----UGCCGUGGGC-GGUUc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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