miRNA display CGI


Results 1 - 20 of 30 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33125 3' -54.5 NC_007497.1 + 17708 1.12 0.000645
Target:  5'- cGGAAUCGCCCUUCACGACGACGGCUCu -3'
miRNA:   3'- -CCUUAGCGGGAAGUGCUGCUGCCGAG- -5'
33125 3' -54.5 NC_007497.1 + 34839 0.74 0.280257
Target:  5'- cGAGcUCGCCCUgCGCGGCcGCGGuCUCg -3'
miRNA:   3'- cCUU-AGCGGGAaGUGCUGcUGCC-GAG- -5'
33125 3' -54.5 NC_007497.1 + 13535 0.73 0.325066
Target:  5'- uGGGcgUGUCCUgcugggcggcgcuUC-CGACGAUGGCUCg -3'
miRNA:   3'- -CCUuaGCGGGA-------------AGuGCUGCUGCCGAG- -5'
33125 3' -54.5 NC_007497.1 + 19703 0.72 0.358359
Target:  5'- uGGAAUCagcuggucguauaGCCCga-ACGACaGCGGCUCu -3'
miRNA:   3'- -CCUUAG-------------CGGGaagUGCUGcUGCCGAG- -5'
33125 3' -54.5 NC_007497.1 + 28828 0.71 0.413556
Target:  5'- cGAAgCGCCCaUCGCGaucaGCGACGGUUg -3'
miRNA:   3'- cCUUaGCGGGaAGUGC----UGCUGCCGAg -5'
33125 3' -54.5 NC_007497.1 + 8980 0.71 0.413556
Target:  5'- cGGAGcCGCUCgaCGCGACGGCGGagcuguaUCa -3'
miRNA:   3'- -CCUUaGCGGGaaGUGCUGCUGCCg------AG- -5'
33125 3' -54.5 NC_007497.1 + 40076 0.7 0.503779
Target:  5'- cGGAAuUCGCCCUUgGCGuaugGugGGC-Cg -3'
miRNA:   3'- -CCUU-AGCGGGAAgUGCug--CugCCGaG- -5'
33125 3' -54.5 NC_007497.1 + 8411 0.7 0.503779
Target:  5'- cGGAGUCGCCgaUCAgCGAgGAgCGGUa- -3'
miRNA:   3'- -CCUUAGCGGgaAGU-GCUgCU-GCCGag -5'
33125 3' -54.5 NC_007497.1 + 31810 0.69 0.535746
Target:  5'- cGAAUCGCCCcu-GCGgccggaGCGGCGGCg- -3'
miRNA:   3'- cCUUAGCGGGaagUGC------UGCUGCCGag -5'
33125 3' -54.5 NC_007497.1 + 19190 0.68 0.568393
Target:  5'- -uGGUCGaCCCga-ACaACGGCGGCUCg -3'
miRNA:   3'- ccUUAGC-GGGaagUGcUGCUGCCGAG- -5'
33125 3' -54.5 NC_007497.1 + 40738 0.68 0.568393
Target:  5'- ---cUUGUCCaUCAUGGCGGCGGC-Cg -3'
miRNA:   3'- ccuuAGCGGGaAGUGCUGCUGCCGaG- -5'
33125 3' -54.5 NC_007497.1 + 1573 0.68 0.579392
Target:  5'- aGGuGAUCGCCgCUgguauCGAUGGCGGCg- -3'
miRNA:   3'- -CC-UUAGCGG-GAagu--GCUGCUGCCGag -5'
33125 3' -54.5 NC_007497.1 + 34686 0.68 0.579392
Target:  5'- -cGAUCGCUaCUUCGCGcuCGGCGGC-Cg -3'
miRNA:   3'- ccUUAGCGG-GAAGUGCu-GCUGCCGaG- -5'
33125 3' -54.5 NC_007497.1 + 44504 0.68 0.608176
Target:  5'- uGGGugGUCGCCCgcugaaguggugcUCGCGuguGCGGCUCg -3'
miRNA:   3'- -CCU--UAGCGGGa------------AGUGCugcUGCCGAG- -5'
33125 3' -54.5 NC_007497.1 + 9202 0.68 0.612621
Target:  5'- aGGAAUUGCCCggCGuggcCGACGcgaucgcgcGCGGCa- -3'
miRNA:   3'- -CCUUAGCGGGaaGU----GCUGC---------UGCCGag -5'
33125 3' -54.5 NC_007497.1 + 40913 0.67 0.634876
Target:  5'- aGGAuccGUCGCCggccaUCGCGAUGACcgaGGCUg -3'
miRNA:   3'- -CCU---UAGCGGga---AGUGCUGCUG---CCGAg -5'
33125 3' -54.5 NC_007497.1 + 36636 0.67 0.634876
Target:  5'- --uGUCGCCgaaUUCGCGACGccaccccuggGCGGuCUCg -3'
miRNA:   3'- ccuUAGCGGg--AAGUGCUGC----------UGCC-GAG- -5'
33125 3' -54.5 NC_007497.1 + 5097 0.67 0.646005
Target:  5'- aGGAAggcaaagCGUUCcUCGCuGGCGACGGCa- -3'
miRNA:   3'- -CCUUa------GCGGGaAGUG-CUGCUGCCGag -5'
33125 3' -54.5 NC_007497.1 + 19621 0.67 0.67264
Target:  5'- uGGAcugaGCCCgagaaagagauCGACGACGGCUa -3'
miRNA:   3'- -CCUuag-CGGGaagu-------GCUGCUGCCGAg -5'
33125 3' -54.5 NC_007497.1 + 6908 0.66 0.690282
Target:  5'- uGGAAUCGCCCUgccgaucccggUCGCccagGGCGAcaucgagugcCGGC-Cg -3'
miRNA:   3'- -CCUUAGCGGGA-----------AGUG----CUGCU----------GCCGaG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.