Results 1 - 20 of 30 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
33125 | 3' | -54.5 | NC_007497.1 | + | 17708 | 1.12 | 0.000645 |
Target: 5'- cGGAAUCGCCCUUCACGACGACGGCUCu -3' miRNA: 3'- -CCUUAGCGGGAAGUGCUGCUGCCGAG- -5' |
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33125 | 3' | -54.5 | NC_007497.1 | + | 8475 | 0.66 | 0.744248 |
Target: 5'- -cGAUCaGCCgcaUUUUGCG-CGGCGGCUCa -3' miRNA: 3'- ccUUAG-CGG---GAAGUGCuGCUGCCGAG- -5' |
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33125 | 3' | -54.5 | NC_007497.1 | + | 21299 | 0.66 | 0.741077 |
Target: 5'- --uAUCGCgCCUUCuggagggugACGAUggaaccgcgcgccgGACGGCUCa -3' miRNA: 3'- ccuUAGCG-GGAAG---------UGCUG--------------CUGCCGAG- -5' |
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33125 | 3' | -54.5 | NC_007497.1 | + | 21426 | 0.66 | 0.733639 |
Target: 5'- uGGAAaggCGCCggcagcaUUCAC-ACGGCGcGCUCg -3' miRNA: 3'- -CCUUa--GCGGg------AAGUGcUGCUGC-CGAG- -5' |
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33125 | 3' | -54.5 | NC_007497.1 | + | 3107 | 0.66 | 0.722926 |
Target: 5'- cGAAUCcCCaCUUCcCGACucgaGCGGCUCu -3' miRNA: 3'- cCUUAGcGG-GAAGuGCUGc---UGCCGAG- -5' |
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33125 | 3' | -54.5 | NC_007497.1 | + | 9639 | 0.66 | 0.690282 |
Target: 5'- cGGcgCGCCggcCGCGACGuCGGCUg -3' miRNA: 3'- cCUuaGCGGgaaGUGCUGCuGCCGAg -5' |
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33125 | 3' | -54.5 | NC_007497.1 | + | 6908 | 0.66 | 0.690282 |
Target: 5'- uGGAAUCGCCCUgccgaucccggUCGCccagGGCGAcaucgagugcCGGC-Cg -3' miRNA: 3'- -CCUUAGCGGGA-----------AGUG----CUGCU----------GCCGaG- -5' |
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33125 | 3' | -54.5 | NC_007497.1 | + | 19621 | 0.67 | 0.67264 |
Target: 5'- uGGAcugaGCCCgagaaagagauCGACGACGGCUa -3' miRNA: 3'- -CCUuag-CGGGaagu-------GCUGCUGCCGAg -5' |
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33125 | 3' | -54.5 | NC_007497.1 | + | 40913 | 0.67 | 0.634876 |
Target: 5'- aGGAuccGUCGCCggccaUCGCGAUGACcgaGGCUg -3' miRNA: 3'- -CCU---UAGCGGga---AGUGCUGCUG---CCGAg -5' |
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33125 | 3' | -54.5 | NC_007497.1 | + | 34839 | 0.74 | 0.280257 |
Target: 5'- cGAGcUCGCCCUgCGCGGCcGCGGuCUCg -3' miRNA: 3'- cCUU-AGCGGGAaGUGCUGcUGCC-GAG- -5' |
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33125 | 3' | -54.5 | NC_007497.1 | + | 28828 | 0.71 | 0.413556 |
Target: 5'- cGAAgCGCCCaUCGCGaucaGCGACGGUUg -3' miRNA: 3'- cCUUaGCGGGaAGUGC----UGCUGCCGAg -5' |
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33125 | 3' | -54.5 | NC_007497.1 | + | 31810 | 0.69 | 0.535746 |
Target: 5'- cGAAUCGCCCcu-GCGgccggaGCGGCGGCg- -3' miRNA: 3'- cCUUAGCGGGaagUGC------UGCUGCCGag -5' |
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33125 | 3' | -54.5 | NC_007497.1 | + | 40738 | 0.68 | 0.568393 |
Target: 5'- ---cUUGUCCaUCAUGGCGGCGGC-Cg -3' miRNA: 3'- ccuuAGCGGGaAGUGCUGCUGCCGaG- -5' |
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33125 | 3' | -54.5 | NC_007497.1 | + | 34686 | 0.68 | 0.579392 |
Target: 5'- -cGAUCGCUaCUUCGCGcuCGGCGGC-Cg -3' miRNA: 3'- ccUUAGCGG-GAAGUGCu-GCUGCCGaG- -5' |
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33125 | 3' | -54.5 | NC_007497.1 | + | 36636 | 0.67 | 0.634876 |
Target: 5'- --uGUCGCCgaaUUCGCGACGccaccccuggGCGGuCUCg -3' miRNA: 3'- ccuUAGCGGg--AAGUGCUGC----------UGCC-GAG- -5' |
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33125 | 3' | -54.5 | NC_007497.1 | + | 15164 | 0.66 | 0.733639 |
Target: 5'- --uGUCGCUCggcgUUCA-GGCgGACGGCUCg -3' miRNA: 3'- ccuUAGCGGG----AAGUgCUG-CUGCCGAG- -5' |
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33125 | 3' | -54.5 | NC_007497.1 | + | 19703 | 0.72 | 0.358359 |
Target: 5'- uGGAAUCagcuggucguauaGCCCga-ACGACaGCGGCUCu -3' miRNA: 3'- -CCUUAG-------------CGGGaagUGCUGcUGCCGAG- -5' |
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33125 | 3' | -54.5 | NC_007497.1 | + | 8980 | 0.71 | 0.413556 |
Target: 5'- cGGAGcCGCUCgaCGCGACGGCGGagcuguaUCa -3' miRNA: 3'- -CCUUaGCGGGaaGUGCUGCUGCCg------AG- -5' |
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33125 | 3' | -54.5 | NC_007497.1 | + | 40076 | 0.7 | 0.503779 |
Target: 5'- cGGAAuUCGCCCUUgGCGuaugGugGGC-Cg -3' miRNA: 3'- -CCUU-AGCGGGAAgUGCug--CugCCGaG- -5' |
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33125 | 3' | -54.5 | NC_007497.1 | + | 8411 | 0.7 | 0.503779 |
Target: 5'- cGGAGUCGCCgaUCAgCGAgGAgCGGUa- -3' miRNA: 3'- -CCUUAGCGGgaAGU-GCUgCU-GCCGag -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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