miRNA display CGI


Results 1 - 20 of 30 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33125 3' -54.5 NC_007497.1 + 1573 0.68 0.579392
Target:  5'- aGGuGAUCGCCgCUgguauCGAUGGCGGCg- -3'
miRNA:   3'- -CC-UUAGCGG-GAagu--GCUGCUGCCGag -5'
33125 3' -54.5 NC_007497.1 + 8411 0.7 0.503779
Target:  5'- cGGAGUCGCCgaUCAgCGAgGAgCGGUa- -3'
miRNA:   3'- -CCUUAGCGGgaAGU-GCUgCU-GCCGag -5'
33125 3' -54.5 NC_007497.1 + 40076 0.7 0.503779
Target:  5'- cGGAAuUCGCCCUUgGCGuaugGugGGC-Cg -3'
miRNA:   3'- -CCUU-AGCGGGAAgUGCug--CugCCGaG- -5'
33125 3' -54.5 NC_007497.1 + 8980 0.71 0.413556
Target:  5'- cGGAGcCGCUCgaCGCGACGGCGGagcuguaUCa -3'
miRNA:   3'- -CCUUaGCGGGaaGUGCUGCUGCCg------AG- -5'
33125 3' -54.5 NC_007497.1 + 19703 0.72 0.358359
Target:  5'- uGGAAUCagcuggucguauaGCCCga-ACGACaGCGGCUCu -3'
miRNA:   3'- -CCUUAG-------------CGGGaagUGCUGcUGCCGAG- -5'
33125 3' -54.5 NC_007497.1 + 13535 0.73 0.325066
Target:  5'- uGGGcgUGUCCUgcugggcggcgcuUC-CGACGAUGGCUCg -3'
miRNA:   3'- -CCUuaGCGGGA-------------AGuGCUGCUGCCGAG- -5'
33125 3' -54.5 NC_007497.1 + 9850 0.66 0.722926
Target:  5'- -cGGUCGCaCaggUCGCGACGGCccGCUCg -3'
miRNA:   3'- ccUUAGCG-Gga-AGUGCUGCUGc-CGAG- -5'
33125 3' -54.5 NC_007497.1 + 7201 0.66 0.712121
Target:  5'- uGGAAUCGaCCggCAUGuucucuguCGGCGGCgUCa -3'
miRNA:   3'- -CCUUAGCgGGaaGUGCu-------GCUGCCG-AG- -5'
33125 3' -54.5 NC_007497.1 + 1963 0.66 0.690282
Target:  5'- cGGAA-CGCCgCaUCGCGGCGGCgucggGGCa- -3'
miRNA:   3'- -CCUUaGCGG-GaAGUGCUGCUG-----CCGag -5'
33125 3' -54.5 NC_007497.1 + 5097 0.67 0.646005
Target:  5'- aGGAAggcaaagCGUUCcUCGCuGGCGACGGCa- -3'
miRNA:   3'- -CCUUa------GCGGGaAGUG-CUGCUGCCGag -5'
33125 3' -54.5 NC_007497.1 + 44504 0.68 0.608176
Target:  5'- uGGGugGUCGCCCgcugaaguggugcUCGCGuguGCGGCUCg -3'
miRNA:   3'- -CCU--UAGCGGGa------------AGUGCugcUGCCGAG- -5'
33125 3' -54.5 NC_007497.1 + 15164 0.66 0.733639
Target:  5'- --uGUCGCUCggcgUUCA-GGCgGACGGCUCg -3'
miRNA:   3'- ccuUAGCGGG----AAGUgCUG-CUGCCGAG- -5'
33125 3' -54.5 NC_007497.1 + 9202 0.68 0.612621
Target:  5'- aGGAAUUGCCCggCGuggcCGACGcgaucgcgcGCGGCa- -3'
miRNA:   3'- -CCUUAGCGGGaaGU----GCUGC---------UGCCGag -5'
33125 3' -54.5 NC_007497.1 + 10154 0.66 0.701236
Target:  5'- cGAggCGCCac-CGCGGCGAccgcCGGCUUg -3'
miRNA:   3'- cCUuaGCGGgaaGUGCUGCU----GCCGAG- -5'
33125 3' -54.5 NC_007497.1 + 19190 0.68 0.568393
Target:  5'- -uGGUCGaCCCga-ACaACGGCGGCUCg -3'
miRNA:   3'- ccUUAGC-GGGaagUGcUGCUGCCGAG- -5'
33125 3' -54.5 NC_007497.1 + 8475 0.66 0.744248
Target:  5'- -cGAUCaGCCgcaUUUUGCG-CGGCGGCUCa -3'
miRNA:   3'- ccUUAG-CGG---GAAGUGCuGCUGCCGAG- -5'
33125 3' -54.5 NC_007497.1 + 21299 0.66 0.741077
Target:  5'- --uAUCGCgCCUUCuggagggugACGAUggaaccgcgcgccgGACGGCUCa -3'
miRNA:   3'- ccuUAGCG-GGAAG---------UGCUG--------------CUGCCGAG- -5'
33125 3' -54.5 NC_007497.1 + 21426 0.66 0.733639
Target:  5'- uGGAAaggCGCCggcagcaUUCAC-ACGGCGcGCUCg -3'
miRNA:   3'- -CCUUa--GCGGg------AAGUGcUGCUGC-CGAG- -5'
33125 3' -54.5 NC_007497.1 + 3107 0.66 0.722926
Target:  5'- cGAAUCcCCaCUUCcCGACucgaGCGGCUCu -3'
miRNA:   3'- cCUUAGcGG-GAAGuGCUGc---UGCCGAG- -5'
33125 3' -54.5 NC_007497.1 + 36636 0.67 0.634876
Target:  5'- --uGUCGCCgaaUUCGCGACGccaccccuggGCGGuCUCg -3'
miRNA:   3'- ccuUAGCGGg--AAGUGCUGC----------UGCC-GAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.