miRNA display CGI


Results 1 - 20 of 33 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33129 3' -51.6 NC_007497.1 + 42221 0.66 0.862684
Target:  5'- aCGCGCUCG-GAAaucgcaaGGAuGCGCcGCg -3'
miRNA:   3'- cGCGCGAGCuCUUga-----CCUuUGCGuUG- -5'
33129 3' -51.6 NC_007497.1 + 21182 0.66 0.860121
Target:  5'- cGCGUGCUgccCGGacuggugaaacggcGAGCUGaGGAGCGCGcACu -3'
miRNA:   3'- -CGCGCGA---GCU--------------CUUGAC-CUUUGCGU-UG- -5'
33129 3' -51.6 NC_007497.1 + 9372 0.66 0.854052
Target:  5'- cGCauCGCUCGAcGAACUGG---CGCAAg -3'
miRNA:   3'- -CGc-GCGAGCU-CUUGACCuuuGCGUUg -5'
33129 3' -51.6 NC_007497.1 + 23296 0.66 0.845167
Target:  5'- -gGUGUUCGAGAGCcucGAucuCGCGGCg -3'
miRNA:   3'- cgCGCGAGCUCUUGac-CUuu-GCGUUG- -5'
33129 3' -51.6 NC_007497.1 + 39785 0.66 0.836039
Target:  5'- -gGuCGC-CGAGAaguucgcugaccACUGGcGAGCGCAGCc -3'
miRNA:   3'- cgC-GCGaGCUCU------------UGACC-UUUGCGUUG- -5'
33129 3' -51.6 NC_007497.1 + 39771 0.66 0.836039
Target:  5'- cCGCGUcgUCGAGGAuCUGcu-GCGUAGCa -3'
miRNA:   3'- cGCGCG--AGCUCUU-GACcuuUGCGUUG- -5'
33129 3' -51.6 NC_007497.1 + 19120 0.66 0.836039
Target:  5'- uGCGUGC-CGAacAACUGGAcGACGCcauuGACg -3'
miRNA:   3'- -CGCGCGaGCUc-UUGACCU-UUGCG----UUG- -5'
33129 3' -51.6 NC_007497.1 + 41096 0.66 0.836039
Target:  5'- aGCaGCGCUacgcCGAccauCUGGAGGCGCGGa -3'
miRNA:   3'- -CG-CGCGA----GCUcuu-GACCUUUGCGUUg -5'
33129 3' -51.6 NC_007497.1 + 43858 0.66 0.826677
Target:  5'- gGCGCGCgaucaUCGAaGGCgucuucgggGuGAAGCGCAGCc -3'
miRNA:   3'- -CGCGCG-----AGCUcUUGa--------C-CUUUGCGUUG- -5'
33129 3' -51.6 NC_007497.1 + 23836 0.67 0.817094
Target:  5'- cGCGUGCUCGAucaGAcguuGCUccaGGcgcGCGCGGCa -3'
miRNA:   3'- -CGCGCGAGCU---CU----UGA---CCuu-UGCGUUG- -5'
33129 3' -51.6 NC_007497.1 + 11744 0.67 0.8073
Target:  5'- uCGCGC--GAGAGCUGGccGCGCu-- -3'
miRNA:   3'- cGCGCGagCUCUUGACCuuUGCGuug -5'
33129 3' -51.6 NC_007497.1 + 17225 0.67 0.787124
Target:  5'- cGCGCaggcagacGCUCGGGccgGGCUgacGGAcgagcAGCGCAGCa -3'
miRNA:   3'- -CGCG--------CGAGCUC---UUGA---CCU-----UUGCGUUG- -5'
33129 3' -51.6 NC_007497.1 + 34276 0.68 0.753427
Target:  5'- gGCGCGCgaugCGAGu-CUGGcguaugcaucCGCGACa -3'
miRNA:   3'- -CGCGCGa---GCUCuuGACCuuu-------GCGUUG- -5'
33129 3' -51.6 NC_007497.1 + 17868 0.68 0.74911
Target:  5'- gGCGCGgUauGGAuGCUGGAAagcgaugcgcucaccGCGCAGCu -3'
miRNA:   3'- -CGCGCgAgcUCU-UGACCUU---------------UGCGUUG- -5'
33129 3' -51.6 NC_007497.1 + 10530 0.68 0.741505
Target:  5'- cGCGCGcCUCGcAGAgcgucaucguuccgACguucGGAGACGguGCg -3'
miRNA:   3'- -CGCGC-GAGC-UCU--------------UGa---CCUUUGCguUG- -5'
33129 3' -51.6 NC_007497.1 + 40718 0.68 0.740414
Target:  5'- gGCGCGCgagcucaucgcggCGGuacgcGAGCgguucGGGGACGCGGCg -3'
miRNA:   3'- -CGCGCGa------------GCU-----CUUGa----CCUUUGCGUUG- -5'
33129 3' -51.6 NC_007497.1 + 9187 0.68 0.733841
Target:  5'- aGUGCGCaugUGAGGACUGucguAACGCuGCu -3'
miRNA:   3'- -CGCGCGa--GCUCUUGACcu--UUGCGuUG- -5'
33129 3' -51.6 NC_007497.1 + 36762 0.68 0.733841
Target:  5'- cGCG-GUUCGGuGGCUGGGAugGgAGCu -3'
miRNA:   3'- -CGCgCGAGCUcUUGACCUUugCgUUG- -5'
33129 3' -51.6 NC_007497.1 + 18580 0.69 0.700437
Target:  5'- gGCGCGcCUCGuGGACacguccGGAAACGUcgGGCc -3'
miRNA:   3'- -CGCGC-GAGCuCUUGa-----CCUUUGCG--UUG- -5'
33129 3' -51.6 NC_007497.1 + 29036 0.69 0.677785
Target:  5'- cGCGCGcCUCGAGcagaaauuuGC-GGAAGCccgGCAGCa -3'
miRNA:   3'- -CGCGC-GAGCUCu--------UGaCCUUUG---CGUUG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.