miRNA display CGI


Results 1 - 19 of 19 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33129 5' -56.4 NC_007497.1 + 42407 0.66 0.629042
Target:  5'- cGCGCCGgaUGuauuccuucaaucucGGAucgUCGAGGCcUUCGAACg -3'
miRNA:   3'- -CGCGGC--GC---------------UCU---AGCUCCGaGAGCUUG- -5'
33129 5' -56.4 NC_007497.1 + 23320 0.66 0.602581
Target:  5'- gGCGCUGCucu-UCGAGuugcguuuccaGUUCUCGAGCg -3'
miRNA:   3'- -CGCGGCGcucuAGCUC-----------CGAGAGCUUG- -5'
33129 5' -56.4 NC_007497.1 + 27884 0.66 0.580638
Target:  5'- aGCGCaccgggaccUGCGAGAaCGAGcGCgcgUCGAACg -3'
miRNA:   3'- -CGCG---------GCGCUCUaGCUC-CGag-AGCUUG- -5'
33129 5' -56.4 NC_007497.1 + 44286 0.67 0.548064
Target:  5'- uCGCCGCGAGcgCugaugucgaaGAGGCUUaCGAc- -3'
miRNA:   3'- cGCGGCGCUCuaG----------CUCCGAGaGCUug -5'
33129 5' -56.4 NC_007497.1 + 33345 0.67 0.548064
Target:  5'- cGCaGCUGCGcGAuccgcugcUCGAuGUUCUCGAGCa -3'
miRNA:   3'- -CG-CGGCGCuCU--------AGCUcCGAGAGCUUG- -5'
33129 5' -56.4 NC_007497.1 + 29548 0.67 0.526667
Target:  5'- gGCGuCCGCGGGAUgCGccacaggcgcggGGGCUUcaCGAGCu -3'
miRNA:   3'- -CGC-GGCGCUCUA-GC------------UCCGAGa-GCUUG- -5'
33129 5' -56.4 NC_007497.1 + 15421 0.68 0.505591
Target:  5'- -gGCCGCGA---CGuGGCgCUCGAACc -3'
miRNA:   3'- cgCGGCGCUcuaGCuCCGaGAGCUUG- -5'
33129 5' -56.4 NC_007497.1 + 36792 0.68 0.464594
Target:  5'- cGCGCaGCG-GAUCGAgccagaacgcgcGGUcCUCGAGCa -3'
miRNA:   3'- -CGCGgCGCuCUAGCU------------CCGaGAGCUUG- -5'
33129 5' -56.4 NC_007497.1 + 21325 0.68 0.464594
Target:  5'- aGCGCgCGCGAGAUCGccgacaugaAGGCggccgccgCUCaGGCc -3'
miRNA:   3'- -CGCG-GCGCUCUAGC---------UCCGa-------GAGcUUG- -5'
33129 5' -56.4 NC_007497.1 + 43994 0.69 0.435013
Target:  5'- gGCGCCgucgGCGuGAUCGAugccgcaugGGCUgcaaUCGAGCg -3'
miRNA:   3'- -CGCGG----CGCuCUAGCU---------CCGAg---AGCUUG- -5'
33129 5' -56.4 NC_007497.1 + 34508 0.69 0.434045
Target:  5'- uGCGCCGCGAucucugaacGAUUGAacgccgagugaugGGCaacggucgaUCUCGGGCg -3'
miRNA:   3'- -CGCGGCGCU---------CUAGCU-------------CCG---------AGAGCUUG- -5'
33129 5' -56.4 NC_007497.1 + 15271 0.69 0.410278
Target:  5'- aGCGCCGCGAGGcgcgcauccaguggaUCGAcuggauGCUCgaCGAGCc -3'
miRNA:   3'- -CGCGGCGCUCU---------------AGCUc-----CGAGa-GCUUG- -5'
33129 5' -56.4 NC_007497.1 + 20822 0.7 0.353276
Target:  5'- cGUGCCGa-AGuUCGAGGggCUCGAGCu -3'
miRNA:   3'- -CGCGGCgcUCuAGCUCCgaGAGCUUG- -5'
33129 5' -56.4 NC_007497.1 + 9940 0.71 0.344891
Target:  5'- uCGCgCGCGAGAcCGcggccgcgcaGGGCgagCUCGAGCg -3'
miRNA:   3'- cGCG-GCGCUCUaGC----------UCCGa--GAGCUUG- -5'
33129 5' -56.4 NC_007497.1 + 27511 0.71 0.328552
Target:  5'- gGUGUugaCGUGcGcgCGAGGCUUUCGAGCg -3'
miRNA:   3'- -CGCG---GCGCuCuaGCUCCGAGAGCUUG- -5'
33129 5' -56.4 NC_007497.1 + 35070 0.71 0.305131
Target:  5'- cUGCCGCagccGAUCGAGGUcagCUUGAACa -3'
miRNA:   3'- cGCGGCGcu--CUAGCUCCGa--GAGCUUG- -5'
33129 5' -56.4 NC_007497.1 + 18529 0.71 0.305131
Target:  5'- cGCGa-GCG-GGUCGAGGCgCUUGAGCc -3'
miRNA:   3'- -CGCggCGCuCUAGCUCCGaGAGCUUG- -5'
33129 5' -56.4 NC_007497.1 + 28969 0.78 0.117588
Target:  5'- gGUGCCGUGAGAUCGuccuGGCUCagguuucggcggccgUUGAACa -3'
miRNA:   3'- -CGCGGCGCUCUAGCu---CCGAG---------------AGCUUG- -5'
33129 5' -56.4 NC_007497.1 + 21488 1.12 0.000378
Target:  5'- aGCGCCGCGAGAUCGAGGCUCUCGAACa -3'
miRNA:   3'- -CGCGGCGCUCUAGCUCCGAGAGCUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.