miRNA display CGI


Results 1 - 20 of 31 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33137 3' -49.7 NC_007497.1 + 35952 0.66 0.929611
Target:  5'- uGAUGgAUGCcgaACGCCGcgGCcgCGGcuUCCg -3'
miRNA:   3'- -CUACgUAUG---UGCGGUa-UGuaGCC--AGG- -5'
33137 3' -49.7 NC_007497.1 + 2845 0.66 0.923553
Target:  5'- cGUGCAUGCuucUGCCGUugAacaGGUCg -3'
miRNA:   3'- cUACGUAUGu--GCGGUAugUag-CCAGg -5'
33137 3' -49.7 NC_007497.1 + 4211 0.66 0.917187
Target:  5'- --cGcCAUGCGCacgaaGCCGaGCAUCGGUUUg -3'
miRNA:   3'- cuaC-GUAUGUG-----CGGUaUGUAGCCAGG- -5'
33137 3' -49.7 NC_007497.1 + 11613 0.66 0.914554
Target:  5'- --cGCGgccuacgauCGCGCCGUGCAgcucgaaaaggaGGUCCg -3'
miRNA:   3'- cuaCGUau-------GUGCGGUAUGUag----------CCAGG- -5'
33137 3' -49.7 NC_007497.1 + 35571 0.66 0.910513
Target:  5'- cAUGCc-GCGCGCgAUcGCGUCGG-CCa -3'
miRNA:   3'- cUACGuaUGUGCGgUA-UGUAGCCaGG- -5'
33137 3' -49.7 NC_007497.1 + 10507 0.66 0.910513
Target:  5'- gGAUGCAU--ACGCCAgacucGCAUCGcGcgCCu -3'
miRNA:   3'- -CUACGUAugUGCGGUa----UGUAGC-Ca-GG- -5'
33137 3' -49.7 NC_007497.1 + 39411 0.66 0.910513
Target:  5'- --gGCGaGCGCGCCGgacguacGCGUCaGGUCg -3'
miRNA:   3'- cuaCGUaUGUGCGGUa------UGUAG-CCAGg -5'
33137 3' -49.7 NC_007497.1 + 28629 0.66 0.909829
Target:  5'- cGGUGCGUGCcgggaucagcgcaACGCCGUuucCAugcUCGG-CCa -3'
miRNA:   3'- -CUACGUAUG-------------UGCGGUAu--GU---AGCCaGG- -5'
33137 3' -49.7 NC_007497.1 + 14610 0.67 0.903535
Target:  5'- --aGCAgguucccGCACGCCAgauCGUCGGcacgugCCa -3'
miRNA:   3'- cuaCGUa------UGUGCGGUau-GUAGCCa-----GG- -5'
33137 3' -49.7 NC_007497.1 + 17386 0.67 0.888678
Target:  5'- --aGCGUAagACGCgGUACA-CGGUCg -3'
miRNA:   3'- cuaCGUAUg-UGCGgUAUGUaGCCAGg -5'
33137 3' -49.7 NC_007497.1 + 4198 0.67 0.887904
Target:  5'- --aGCGUcgauggcGCGCGCCGggUAUuccCGGUCCa -3'
miRNA:   3'- cuaCGUA-------UGUGCGGU--AUGua-GCCAGG- -5'
33137 3' -49.7 NC_007497.1 + 29520 0.67 0.88081
Target:  5'- -cUGgAUGCGCGCCucgcgGCGcUCGG-CCg -3'
miRNA:   3'- cuACgUAUGUGCGGua---UGU-AGCCaGG- -5'
33137 3' -49.7 NC_007497.1 + 9741 0.67 0.880007
Target:  5'- --gGCAUGCGCGCgAUGCGcgaaagccUCGcgaugcaGUCCg -3'
miRNA:   3'- cuaCGUAUGUGCGgUAUGU--------AGC-------CAGG- -5'
33137 3' -49.7 NC_007497.1 + 12182 0.67 0.872656
Target:  5'- aGcgGCAUugGCGCCuguguUCGGUUg -3'
miRNA:   3'- -CuaCGUAugUGCGGuauguAGCCAGg -5'
33137 3' -49.7 NC_007497.1 + 41959 0.67 0.872656
Target:  5'- --aGCAUGCACGCgGUGCuggcgcaUGGUgCg -3'
miRNA:   3'- cuaCGUAUGUGCGgUAUGua-----GCCAgG- -5'
33137 3' -49.7 NC_007497.1 + 37825 0.67 0.872656
Target:  5'- -cUGUAUGCACGCC------UGGUCCu -3'
miRNA:   3'- cuACGUAUGUGCGGuauguaGCCAGG- -5'
33137 3' -49.7 NC_007497.1 + 17820 0.68 0.864224
Target:  5'- --gGCG-ACACGCU-UACGUUGGUCg -3'
miRNA:   3'- cuaCGUaUGUGCGGuAUGUAGCCAGg -5'
33137 3' -49.7 NC_007497.1 + 1452 0.68 0.82789
Target:  5'- --gGCGaucUGCACGCCGUGCuccgucUCGGUg- -3'
miRNA:   3'- cuaCGU---AUGUGCGGUAUGu-----AGCCAgg -5'
33137 3' -49.7 NC_007497.1 + 42055 0.68 0.82789
Target:  5'- -cUGCGUGCGC-UCAaGC-UCGGUCCc -3'
miRNA:   3'- cuACGUAUGUGcGGUaUGuAGCCAGG- -5'
33137 3' -49.7 NC_007497.1 + 43787 0.69 0.798195
Target:  5'- gGAUGCGgcuaucaGCugGCUcacggAUGCGUCGG-CCg -3'
miRNA:   3'- -CUACGUa------UGugCGG-----UAUGUAGCCaGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.