miRNA display CGI


Results 1 - 20 of 37 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33157 3' -58.2 NC_007497.1 + 1824 0.67 0.462186
Target:  5'- aUC-CGCGCGAuccgauagacgGUCGUUaCCaGCGGCCGg -3'
miRNA:   3'- -AGuGUGUGCU-----------UAGCGG-GGaCGCCGGC- -5'
33157 3' -58.2 NC_007497.1 + 5563 0.66 0.513007
Target:  5'- cUACACgACGAAgCGCgUCggcgGCGGCCu -3'
miRNA:   3'- aGUGUG-UGCUUaGCGgGGa---CGCCGGc -5'
33157 3' -58.2 NC_007497.1 + 5610 0.66 0.513007
Target:  5'- -uGCGCGCGAugaagGUCGCCgCCaGCgaguaagcgucgGGCCGu -3'
miRNA:   3'- agUGUGUGCU-----UAGCGG-GGaCG------------CCGGC- -5'
33157 3' -58.2 NC_007497.1 + 5803 0.66 0.502648
Target:  5'- ---aGCugGAAgacggUGCCCgaGCGGUCGg -3'
miRNA:   3'- agugUGugCUUa----GCGGGgaCGCCGGC- -5'
33157 3' -58.2 NC_007497.1 + 6176 0.73 0.191833
Target:  5'- -aACGCGCGug-CGCUgUUGCGGCCGc -3'
miRNA:   3'- agUGUGUGCuuaGCGGgGACGCCGGC- -5'
33157 3' -58.2 NC_007497.1 + 8802 0.68 0.395798
Target:  5'- -uGCGCGCGggUCGCUUC-GCGGauaCGc -3'
miRNA:   3'- agUGUGUGCuuAGCGGGGaCGCCg--GC- -5'
33157 3' -58.2 NC_007497.1 + 8914 0.69 0.327881
Target:  5'- gUCACGCGCGAucagGUCGaUuuUGCGGUCGc -3'
miRNA:   3'- -AGUGUGUGCU----UAGCgGggACGCCGGC- -5'
33157 3' -58.2 NC_007497.1 + 9903 0.73 0.202295
Target:  5'- -gGgACGCGAAUCGCCgggacgCCguaUGCGGCCGu -3'
miRNA:   3'- agUgUGUGCUUAGCGG------GG---ACGCCGGC- -5'
33157 3' -58.2 NC_007497.1 + 13766 0.71 0.268981
Target:  5'- aCGcCGCAUGggUCGCCgCaGgGGCCGc -3'
miRNA:   3'- aGU-GUGUGCuuAGCGGgGaCgCCGGC- -5'
33157 3' -58.2 NC_007497.1 + 13901 0.71 0.268981
Target:  5'- aCGcCGCAUGggUCGCCgCaGgGGCCGc -3'
miRNA:   3'- aGU-GUGUGCuuAGCGGgGaCgCCGGC- -5'
33157 3' -58.2 NC_007497.1 + 17699 0.66 0.502648
Target:  5'- aUCGCGCGacgGAAUCGCCCUUcacgacGaCGGCUc -3'
miRNA:   3'- -AGUGUGUg--CUUAGCGGGGA------C-GCCGGc -5'
33157 3' -58.2 NC_007497.1 + 21326 0.73 0.191833
Target:  5'- gCGCGCGCGAgAUCGCCgacaugaagGCGGCCGc -3'
miRNA:   3'- aGUGUGUGCU-UAGCGGgga------CGCCGGC- -5'
33157 3' -58.2 NC_007497.1 + 22288 0.74 0.167733
Target:  5'- -gACAUACGAG--GCCUgUGCGGCCGa -3'
miRNA:   3'- agUGUGUGCUUagCGGGgACGCCGGC- -5'
33157 3' -58.2 NC_007497.1 + 23624 0.7 0.297301
Target:  5'- -aGCACGCGGccgccggccgUGaCCCaCUGCGGCCGg -3'
miRNA:   3'- agUGUGUGCUua--------GC-GGG-GACGCCGGC- -5'
33157 3' -58.2 NC_007497.1 + 23900 0.71 0.26225
Target:  5'- gCGCGCACGuccuucguGUCGCCaUUGCaGGCCGu -3'
miRNA:   3'- aGUGUGUGCu-------UAGCGGgGACG-CCGGC- -5'
33157 3' -58.2 NC_007497.1 + 26534 0.7 0.29001
Target:  5'- aCACGCGCGAcguagCGCCCCUGauagauGCCc -3'
miRNA:   3'- aGUGUGUGCUua---GCGGGGACgc----CGGc -5'
33157 3' -58.2 NC_007497.1 + 28774 0.69 0.344022
Target:  5'- cUCGCGCGCGGua-GCCCaa--GGCCGg -3'
miRNA:   3'- -AGUGUGUGCUuagCGGGgacgCCGGC- -5'
33157 3' -58.2 NC_007497.1 + 30901 0.66 0.492381
Target:  5'- aCcCAUGCGg--CGuCCCCUGCGGCgGc -3'
miRNA:   3'- aGuGUGUGCuuaGC-GGGGACGCCGgC- -5'
33157 3' -58.2 NC_007497.1 + 30945 0.68 0.414139
Target:  5'- gCcCAUGCGGcgC-CCCCUGCGGCgGc -3'
miRNA:   3'- aGuGUGUGCUuaGcGGGGACGCCGgC- -5'
33157 3' -58.2 NC_007497.1 + 30990 0.67 0.432993
Target:  5'- gCcCAUGCGGcg-GCCCCUGCGGCg- -3'
miRNA:   3'- aGuGUGUGCUuagCGGGGACGCCGgc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.