miRNA display CGI


Results 1 - 20 of 37 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33157 3' -58.2 NC_007497.1 + 31802 1.09 0.000382
Target:  5'- cUCACACACGAAUCGCCCCUGCGGCCGg -3'
miRNA:   3'- -AGUGUGUGCUUAGCGGGGACGCCGGC- -5'
33157 3' -58.2 NC_007497.1 + 34605 0.66 0.523453
Target:  5'- cCGCgGCACGcucCGUUgCUGCGGCCa -3'
miRNA:   3'- aGUG-UGUGCuuaGCGGgGACGCCGGc -5'
33157 3' -58.2 NC_007497.1 + 17699 0.66 0.502648
Target:  5'- aUCGCGCGacgGAAUCGCCCUUcacgacGaCGGCUc -3'
miRNA:   3'- -AGUGUGUg--CUUAGCGGGGA------C-GCCGGc -5'
33157 3' -58.2 NC_007497.1 + 40598 0.66 0.496476
Target:  5'- gCGCGCGCcaucgacgcuucgauGAG-CGCcauugCCUUGCGGCCGg -3'
miRNA:   3'- aGUGUGUG---------------CUUaGCG-----GGGACGCCGGC- -5'
33157 3' -58.2 NC_007497.1 + 1824 0.67 0.462186
Target:  5'- aUC-CGCGCGAuccgauagacgGUCGUUaCCaGCGGCCGg -3'
miRNA:   3'- -AGuGUGUGCU-----------UAGCGG-GGaCGCCGGC- -5'
33157 3' -58.2 NC_007497.1 + 32464 0.68 0.404903
Target:  5'- gUCGCAagauggaacccgUACGcGUUGCCgCCggcgGCGGCCGc -3'
miRNA:   3'- -AGUGU------------GUGCuUAGCGG-GGa---CGCCGGC- -5'
33157 3' -58.2 NC_007497.1 + 39287 0.68 0.377989
Target:  5'- -aGCACGCGAA---CCCCgaUGCGGUCGa -3'
miRNA:   3'- agUGUGUGCUUagcGGGG--ACGCCGGC- -5'
33157 3' -58.2 NC_007497.1 + 37877 0.69 0.360727
Target:  5'- cCGCGCgaucuccguACGAAUUGCgCCCU-CGGCCu -3'
miRNA:   3'- aGUGUG---------UGCUUAGCG-GGGAcGCCGGc -5'
33157 3' -58.2 NC_007497.1 + 40817 0.69 0.344022
Target:  5'- ---gGCGCGAgcGUCGCUgCaGCGGCCGc -3'
miRNA:   3'- agugUGUGCU--UAGCGGgGaCGCCGGC- -5'
33157 3' -58.2 NC_007497.1 + 23624 0.7 0.297301
Target:  5'- -aGCACGCGGccgccggccgUGaCCCaCUGCGGCCGg -3'
miRNA:   3'- agUGUGUGCUua--------GC-GGG-GACGCCGGC- -5'
33157 3' -58.2 NC_007497.1 + 26534 0.7 0.29001
Target:  5'- aCACGCGCGAcguagCGCCCCUGauagauGCCc -3'
miRNA:   3'- aGUGUGUGCUua---GCGGGGACgc----CGGc -5'
33157 3' -58.2 NC_007497.1 + 34832 0.77 0.096417
Target:  5'- gCACGCuCGAGcUCGCCCUgcGCGGCCGc -3'
miRNA:   3'- aGUGUGuGCUU-AGCGGGGa-CGCCGGC- -5'
33157 3' -58.2 NC_007497.1 + 33023 0.77 0.102005
Target:  5'- cUCGCGCGCGuuGUCGCCCaucgacagcGCGGCCa -3'
miRNA:   3'- -AGUGUGUGCu-UAGCGGGga-------CGCCGGc -5'
33157 3' -58.2 NC_007497.1 + 22288 0.74 0.167733
Target:  5'- -gACAUACGAG--GCCUgUGCGGCCGa -3'
miRNA:   3'- agUGUGUGCUUagCGGGgACGCCGGC- -5'
33157 3' -58.2 NC_007497.1 + 33998 0.73 0.191833
Target:  5'- aUCGCugccaGCGugcgcgCGCCCCUGuCGGCCGc -3'
miRNA:   3'- -AGUGug---UGCuua---GCGGGGAC-GCCGGC- -5'
33157 3' -58.2 NC_007497.1 + 23900 0.71 0.26225
Target:  5'- gCGCGCACGuccuucguGUCGCCaUUGCaGGCCGu -3'
miRNA:   3'- aGUGUGUGCu-------UAGCGGgGACG-CCGGC- -5'
33157 3' -58.2 NC_007497.1 + 13766 0.71 0.268981
Target:  5'- aCGcCGCAUGggUCGCCgCaGgGGCCGc -3'
miRNA:   3'- aGU-GUGUGCuuAGCGGgGaCgCCGGC- -5'
33157 3' -58.2 NC_007497.1 + 13901 0.71 0.268981
Target:  5'- aCGcCGCAUGggUCGCCgCaGgGGCCGc -3'
miRNA:   3'- aGU-GUGUGCuuAGCGGgGaCgCCGGC- -5'
33157 3' -58.2 NC_007497.1 + 40532 0.66 0.523453
Target:  5'- aCGCACACGccgcucAUCGCgugaugCUCgGCGGCCa -3'
miRNA:   3'- aGUGUGUGCu-----UAGCG------GGGaCGCCGGc -5'
33157 3' -58.2 NC_007497.1 + 21326 0.73 0.191833
Target:  5'- gCGCGCGCGAgAUCGCCgacaugaagGCGGCCGc -3'
miRNA:   3'- aGUGUGUGCU-UAGCGGgga------CGCCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.