miRNA display CGI


Results 21 - 36 of 36 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33161 3' -54.2 NC_007497.1 + 28194 0.69 0.537231
Target:  5'- -cCGAACACGccggaCGACGGGUCacucuucugcaGCGCAGg -3'
miRNA:   3'- cuGCUUGUGCa----GCUGCUCAG-----------CGCGUU- -5'
33161 3' -54.2 NC_007497.1 + 29388 0.66 0.704616
Target:  5'- aGGCGAGCaggGCGUUGuCGuuUUGCGCAc -3'
miRNA:   3'- -CUGCUUG---UGCAGCuGCucAGCGCGUu -5'
33161 3' -54.2 NC_007497.1 + 29792 0.75 0.232002
Target:  5'- cGCGAACugGUCGGuCgGAGUCGgCGCGAc -3'
miRNA:   3'- cUGCUUGugCAGCU-G-CUCAGC-GCGUU- -5'
33161 3' -54.2 NC_007497.1 + 29883 0.68 0.592594
Target:  5'- cGCGGAUAC-UCGGCGAGU-GCGUGAu -3'
miRNA:   3'- cUGCUUGUGcAGCUGCUCAgCGCGUU- -5'
33161 3' -54.2 NC_007497.1 + 34107 1.07 0.001496
Target:  5'- cGACGAACACGUCGACGAGUCGCGCAAg -3'
miRNA:   3'- -CUGCUUGUGCAGCUGCUCAGCGCGUU- -5'
33161 3' -54.2 NC_007497.1 + 34186 0.66 0.715602
Target:  5'- aGACGAGCua---G-UGAGUCGCGCAAa -3'
miRNA:   3'- -CUGCUUGugcagCuGCUCAGCGCGUU- -5'
33161 3' -54.2 NC_007497.1 + 34258 0.69 0.526356
Target:  5'- aACGAugACGcUCuGCGAGgCGCGCGAu -3'
miRNA:   3'- cUGCUugUGC-AGcUGCUCaGCGCGUU- -5'
33161 3' -54.2 NC_007497.1 + 34411 0.68 0.591474
Target:  5'- cGGCGccuGCAUGUCGAucaaacuCGAcGUCGCGCu- -3'
miRNA:   3'- -CUGCu--UGUGCAGCU-------GCU-CAGCGCGuu -5'
33161 3' -54.2 NC_007497.1 + 36167 0.68 0.615045
Target:  5'- gGGCgGGGCGCGUCGGCcgcccGGUCGUGUg- -3'
miRNA:   3'- -CUG-CUUGUGCAGCUGc----UCAGCGCGuu -5'
33161 3' -54.2 NC_007497.1 + 39401 0.67 0.637558
Target:  5'- uACGGACACG--GGCGAG-CGCGCc- -3'
miRNA:   3'- cUGCUUGUGCagCUGCUCaGCGCGuu -5'
33161 3' -54.2 NC_007497.1 + 39841 0.67 0.671261
Target:  5'- aGACGGACugGgCGGCcacGUgGCGCAAc -3'
miRNA:   3'- -CUGCUUGugCaGCUGcu-CAgCGCGUU- -5'
33161 3' -54.2 NC_007497.1 + 40640 0.67 0.66005
Target:  5'- gGGCGGcaugAC-CGUCGACGAGUgC-CGCGAg -3'
miRNA:   3'- -CUGCU----UGuGCAGCUGCUCA-GcGCGUU- -5'
33161 3' -54.2 NC_007497.1 + 41222 0.67 0.660051
Target:  5'- -cCGGccGCACGUCGAauUGAGcCGCGCc- -3'
miRNA:   3'- cuGCU--UGUGCAGCU--GCUCaGCGCGuu -5'
33161 3' -54.2 NC_007497.1 + 41549 0.7 0.463091
Target:  5'- cGAgGAGCACugGUCGACG-GUUGCGUg- -3'
miRNA:   3'- -CUgCUUGUG--CAGCUGCuCAGCGCGuu -5'
33161 3' -54.2 NC_007497.1 + 43989 0.67 0.648812
Target:  5'- aGACGGGCGcCGUCGGCGuGaUCGaugcCGCAu -3'
miRNA:   3'- -CUGCUUGU-GCAGCUGCuC-AGC----GCGUu -5'
33161 3' -54.2 NC_007497.1 + 44564 0.67 0.670142
Target:  5'- ---uGGCACGaUCGGCGAucacaucGUCGCGCAc -3'
miRNA:   3'- cugcUUGUGC-AGCUGCU-------CAGCGCGUu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.